Locus 164

Sequence ID 2L_DroMel_CAF1
Location 494,813 – 494,929
Length 116
Max. P 0.542013
window252

overview

Window 2

Location 494,813 – 494,929
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.21
Mean single sequence MFE -29.49
Consensus MFE -18.84
Energy contribution -21.04
Covariance contribution 2.20
Combinations/Pair 1.10
Mean z-score -1.67
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.542013
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 494813 116 - 22407834
GAUAGCUAAUUUCCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAAACGGAAAUGAAUGGAUCAUGCUAAACUUA----AAUGAUUCAAAAUCUAUUAGUGGAGUCAUUCGCCUGUUGGCUA
..(((((((((((((((((((((.......((..(((.((.....)).)))..))((((((((..........----.))))))))..)))).)))))))))..........)))))))) ( -31.70)
>DroSec_CAF1 40492 116 - 1
GAUAGCUAAUUUCCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAAACGGAAAUGAAUGGAUCAUGCUAAACUUA----AAUGAUUCAAAAUCUGUUAGUGGAGUCAUUCGCCUGUUGGCUA
..(((((((((((((((((((((.......((..(((.((.....)).)))..))((((((((..........----.))))))))..)))).)))))))))..........)))))))) ( -31.70)
>DroSim_CAF1 40680 116 - 1
GAUAGCUAAUUUCCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAAACGGAAAUGAAUGGAUCAUGCUAAACUUA----AAUGAUUCAAAAUCUAUUAGUAGAGUCAUUCGCCUGUUGGCUA
..((((((((....((..((.((((.((((.(..(((.((.....)).)))..))))).)))).)).......----((((((((..............)))))))).))..)))))))) ( -31.04)
>DroEre_CAF1 41323 109 - 1
-----------UUCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAGGCGGAAAUGAAUGAAUAAUGCUAGAUUUAAAUAAGUGAAUCAAGAAUAAAUAGUGGAGGCAUUCGCCUGUUGGCUG
-----------(((((((((.((....(((((..(((((.....)))))...)))))....)).)).((((((......)))))).........))))))).......(((....))).. ( -23.20)
>DroYak_CAF1 40931 112 - 1
GAUAGCCCGUUUCCGCUAAGGAUGAGGCAUUUUGUUUGCGGAA-ACGGAAAUGAAUGCAUCAUGCUAAACUUA----AGUGAAUAAAGAGUCAACAAGUAA---AUAAUCCUGUUGGUUA
..((((((((((((((..((((((...))))))....))))))-))))..((((.....))))))))......----...........(..(((((.(...---.....).)))))..). ( -29.80)
>consensus
GAUAGCUAAUUUCCGCUGAGGAUGAGCCAUUUUGUUUGCGGAAAACGGAAAUGAAUGGAUCAUGCUAAACUUA____AAUGAUUCAAAAUCUAUUAGUGGAGUCAUUCGCCUGUUGGCUA
..((((........))))((.((((.((((.(..(((.((.....)).)))..))))).)))).))...........((((((((..............)))))))).(((....))).. (-18.84 = -21.04 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:47 2006