| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,406,836 – 4,406,928 |
| Length | 92 |
| Max. P | 0.751874 |
| Location | 4,406,836 – 4,406,928 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 92.27 |
| Mean single sequence MFE | -36.75 |
| Consensus MFE | -30.76 |
| Energy contribution | -31.35 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.751874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4406836 92 - 22407834 AUCAGCCGCU------GCAACAGUUCCACAUGGGCUUGCCCAUACAGUCGGAGGCGCCUCCGCUGGAAACCCACUUUGGAGCAGUGGUGAGCCAGAGU .(((.(((((------((.....((((..(((((....)))))..((.(((((....)))))))))))..((.....)).))))))))))........ ( -37.50) >DroSec_CAF1 12523 92 - 1 AUCAGCCUCU------GCAACAGUUCCACAUGGGCUUGCCCAUCCAGUCGGAGGCGCCUCCGCUGGAAACCCACUUUGGAGCAGUGGUGAGCCAGAGU ......((((------((.((.((((((..((((....))))(((((.(((((....)))))))))).........))))))....))..).))))). ( -37.40) >DroSim_CAF1 13505 92 - 1 AUCAGCCUCU------GCAACAGUUCCACAUGGGCUUGCCCAUUCAGUCGGAGGCGCCUCCGCUGGAAACCCACUUUGGAGCAGUGGUGAGCCAGAGU ......((((------((.((.((((((..((((....))))(((((.(((((....)))))))))).........))))))....))..).))))). ( -34.50) >DroEre_CAF1 12596 92 - 1 AUCAGCCUCU------GCAACAGUUCCACAUGGGCUUGCCCAUCCAGUCGGAGGCGCCUCCGCUGGAAACCCACUUUGGGGCAGUGGUGAGCCAGAGU .(((.((.((------((............((((....))))(((((.(((((....))))))))))..(((.....))))))).)))))........ ( -39.50) >DroYak_CAF1 12648 92 - 1 AUCAGCCUCU------GCAACAGUUCCACAUGGGCUUGCCCAUCCAGUCGGAGGCGCCACCGCUGGAAACCCACUUUGGGGCAGUGGUGAGCCAGAGU .((.((((((------((....(.....)(((((....)))))...).)))))))((((((((((....(((.....))).)))))))).))..)).. ( -38.80) >DroAna_CAF1 16200 98 - 1 CCCAGCCUCUGCAGCUGCAACAGUUCCACAUGGGCUUGCCCAUCCAGUCGGAGGUGCCGCCGUUGGAAACCCACUUUGGUGCCGUUAUCAGUCAGAGU ......(((((..((((.(((...((((((((((....)))))...)).)))((..(((..((.((....))))..)))..)))))..))))))))). ( -32.80) >consensus AUCAGCCUCU______GCAACAGUUCCACAUGGGCUUGCCCAUCCAGUCGGAGGCGCCUCCGCUGGAAACCCACUUUGGAGCAGUGGUGAGCCAGAGU ......((((......((.((.((((((..((((....))))(((((.(((((....)))))))))).........)))))).)).)).....)))). (-30.76 = -31.35 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:18 2006