Locus 1635

Sequence ID 2L_DroMel_CAF1
Location 4,393,637 – 4,393,735
Length 98
Max. P 0.688128
window2623

overview

Window 3

Location 4,393,637 – 4,393,735
Length 98
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.06
Mean single sequence MFE -31.85
Consensus MFE -15.27
Energy contribution -15.10
Covariance contribution -0.17
Combinations/Pair 1.18
Mean z-score -2.12
Structure conservation index 0.48
SVM decision value 0.32
SVM RNA-class probability 0.688128
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4393637 98 - 22407834
UAUAUGCU-------CCACCCUACUAGAUGUUCGAGGACGUGAACACGUCGC------CUUCAUUGGAGGGCGACAUGUCGAUUCCGGGCAAAAGAACCACAACU-GCAACG
....(((.-------.............((((((.(((((...(((.(((((------((((....))))))))).))))).)))))))))..............-)))... ( -28.69)
>DroPse_CAF1 6520 102 - 1
UUUGUGAU---GAUUUCA------CAGAUGUUCGAAGAUGUAAACACGUCGCCGUCGCCCUCUUUGGAGGGUGACAUGUCCAUACCAGGCAAACGAACCACAACG-ACAACA
(((((((.---....)))------)))).(((((..(((((....)))))((((((((((((....))))))))).((.......)))))...))))).......-...... ( -37.60)
>DroSec_CAF1 4849 98 - 1
UAUGUGCU-------CCACCCCUCUAGAUGUUCGAGGACGUCAACACGUCGC------CUUCCUUGGAGGGCGACAUGUCGAUUCCAGGCAAAAGAACCACAACU-GCAACG
..((((..-------...........((((((....)))))).....(((((------((((....))))))))).((((.......)))).......))))...-...... ( -30.50)
>DroSim_CAF1 4911 98 - 1
UAUGUGCU-------CCACCCCUCUAGAUGUUCGAGGACGUGAACACGUCGC------CUUCCUUGGAGGGCGACAUGUCGAUUCCAGGCAAAAGAACCACAACU-GCAACG
....(((.-------.....((((.........))))..(((.....(((((------((((....))))))))).((((.......)))).......)))....-)))... ( -31.00)
>DroYak_CAF1 4901 100 - 1
UAUGUGUGCCU-----CCCCCAACUAGAUGUUCGAGGACGUCAACACGUCGC------CUUCCUUGGAGGGCGACAUGUCGAUUCCGGGCAAAAGAACCACAACU-GCAACG
..(((((((((-----...(.(((.....))).).(((.(((.(((.(((((------((((....))))))))).))).))))))))))).......))))...-...... ( -34.31)
>DroMoj_CAF1 5660 93 - 1
ACUGUGUUCA---UUUCA------UAGAUGUUUGAGGACGUCAAUACAUCGC------CCUCUUUGGAGGGCGACAUGUCUAUACCGGGCAAACGCACGAC----AACAACA
..((((((..---.....------..((((((....))))))......((((------((((....))))))))..(((((.....)))))))))))....----....... ( -29.00)
>consensus
UAUGUGCU_______CCACCC__CUAGAUGUUCGAGGACGUCAACACGUCGC______CUUCCUUGGAGGGCGACAUGUCGAUUCCAGGCAAAAGAACCACAACU_GCAACG
.............................((((..............(((((......((((....))))))))).((((.......))))...)))).............. (-15.27 = -15.10 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:14 2006