Locus 1634

Sequence ID 2L_DroMel_CAF1
Location 4,382,708 – 4,382,801
Length 93
Max. P 0.682560
window2622

overview

Window 2

Location 4,382,708 – 4,382,801
Length 93
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 73.19
Mean single sequence MFE -29.43
Consensus MFE -15.29
Energy contribution -15.62
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.52
SVM decision value 0.31
SVM RNA-class probability 0.682560
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4382708 93 - 22407834
AACAGUCGAUUACAGCG----------UUUGAUAUCGAUAAGCGCUCGAUAACAAUACGCUGAAAACAGGGUUGCCC-----------GUUGUUGAUAGCCCUGAAAAUUGUAA
.(((((......(((((----------((((.((((((.......)))))).))).))))))....((((((((..(-----------(....)).))))))))...))))).. ( -29.80)
>DroSec_CAF1 34463 97 - 1
GAUAGUCGAUUACAG-----------------UAUCGAUAACAGCUCGAUAACAAGAGUCUGGAAACAGGGUGGCUCCGGCAUAUCAGAUUGUCGAUAGCCCUGAACAUUGUAA
....((((((.....-----------------.))))))..((((((........))).)))....((((((.....(((((........)))))...)))))).......... ( -28.30)
>DroSim_CAF1 30897 112 - 1
GAUAGUCGAUUACAGCGUAUCUGGUUGUUUGGUAUCGAUAACAGCUCGAUAACAAG--GCUGGAAACAGGGUGGCUCCUGCAUAUCAGAUUGUCGAUAGCCCUGAGCAUUGUAA
.........((((((.((.((..((..((((.((((((.......)))))).))))--))..))..((((((.((....)).((((........)))))))))).)).)))))) ( -30.20)
>consensus
GAUAGUCGAUUACAGCG__________UUUG_UAUCGAUAACAGCUCGAUAACAAGA_GCUGGAAACAGGGUGGCUCC_GCAUAUCAGAUUGUCGAUAGCCCUGAACAUUGUAA
.........((((((.................((((((.......))))))...............(((((((((................)))....))))))....)))))) (-15.29 = -15.62 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:13 2006