Locus 1631

Sequence ID 2L_DroMel_CAF1
Location 4,372,264 – 4,372,384
Length 120
Max. P 0.741830
window2618

overview

Window 8

Location 4,372,264 – 4,372,384
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.49
Mean single sequence MFE -35.82
Consensus MFE -26.93
Energy contribution -28.30
Covariance contribution 1.37
Combinations/Pair 1.24
Mean z-score -1.86
Structure conservation index 0.75
SVM decision value 0.45
SVM RNA-class probability 0.741830
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4372264 120 + 22407834
UUAACAAUAUGGUUCGAAGUUUGGCCCAGUGGACGAAGACGCUGAGCUUCCCCUCGCGUCUCUCGCCCAAUCGCAACUCCAAGGACUGCUCCACUCUGGCCAGUCCCGUACCGCCACCAA
..........(((.((....((((((.(((((((((((((((.(((......))))))))).))).......(((..((....)).)))))))))..))))))...)).)))........ ( -39.80)
>DroVir_CAF1 45573 119 + 1
-AACCAAAAUGGUACGCAGCCUGGCACAGUGGACCAAAACGUUGAGUUUCCCCUCACGCCUGUCGCCCAAUCGCAAUUCCAAGGAUUGCUCCACACUGGCCAGCCCGGUGCCGCCGCCAA
-.........(((((.(.(.(((((.((((((((.....(((.(((......))))))...)))........((((((.....))))))....)))))))))).).))))))........ ( -37.90)
>DroGri_CAF1 34987 120 + 1
CAAUCAAAAUGGUACGCAGCUUGGCACAGUGGACCAAAACGUUGAGUUUUCCCUCACGUCUGUCCCCCAAUCGCAAUUCGAAAGAUUGCUCCACAUUGGCCAAUCCGGUGCCGCCACCAA
..........(((((.(.(.(((((.((((((((....((((.(((......)))))))..)))........(((((.(....))))))....)))))))))).).))))))........ ( -35.40)
>DroWil_CAF1 2 111 + 1
---------UGGUUCGCAGCCUAGCCCAGUGGACCAAAACGUUGAGUUUUCCCUCACGUUUGUCGCCCAAUCGCAAUUCCAAGGAUUGCUCCACUCUGGCCAGUCCAGUGCCUCCGCCGA
---------.(((..((((.((.(((.((((((...((((((.(((......)))))))))...........((((((.....))))))))))))..))).)).)...)))....))).. ( -31.40)
>DroMoj_CAF1 40884 120 + 1
AAAUCAAAAUGGUACGCAGUCUAGCACAGUGGACCAAAACGUUAAGUUUUCCAUCACGUUUGUCGCCCAAUCGCAAUUCCAAGGAUUGCUCAACUCUGGCCAGCCCAGUGCCACCGCCAA
.........((((((...(.((.((.(((.((((..((((((.............)))))))))........((((((.....))))))....).))))).)))...))))))....... ( -27.02)
>DroAna_CAF1 28801 120 + 1
UAAACAAUAUGGUUCGCAGUCUGGCCCAGUGGACGAAGACGCUGAGCUUCCCCUCGCGUCUUUCGCCGAAUCGCAACUCCAAGGACUGCUCCACUUUGGCCAGUCCGGUGCCACCACCCA
.........((((.(((.(.((((((.(((((((((((((((.(((......)))))))).)))).......(((..((....)).)))))))))..)))))).)..)))..)))).... ( -43.40)
>consensus
_AAACAAAAUGGUACGCAGCCUGGCACAGUGGACCAAAACGUUGAGUUUCCCCUCACGUCUGUCGCCCAAUCGCAAUUCCAAGGAUUGCUCCACUCUGGCCAGUCCGGUGCCGCCACCAA
.........((((..(((.((((((..((((((...((((((.(((......)))))))))...........((((((.....))))))))))))...)))))...).))).)))).... (-26.93 = -28.30 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:09 2006