Locus 1630

Sequence ID 2L_DroMel_CAF1
Location 4,364,634 – 4,364,738
Length 104
Max. P 0.564674
window2617

overview

Window 7

Location 4,364,634 – 4,364,738
Length 104
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 82.74
Mean single sequence MFE -29.40
Consensus MFE -17.02
Energy contribution -18.97
Covariance contribution 1.95
Combinations/Pair 1.16
Mean z-score -2.37
Structure conservation index 0.58
SVM decision value 0.06
SVM RNA-class probability 0.564674
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4364634 104 - 22407834
GUUUCA--GAUGAAAUCGAAUCAAAGCUG-----CAGCUCUGAAAUCGUCAUAUGAAAUGCAUUCGAGCGCGGUAAUUUGCAAUUUUAUGCGUUUUACAC--GCGGUGCCUCA
((((((--.((((...(((.(((.(((..-----..))).)))..))))))).))))))((((.....((((((((..((((......))))..)))).)--))))))).... ( -29.90)
>DroVir_CAF1 30652 105 - 1
----CAAAAAUGAAAUCGAAUCAAUGCUGAAUGCCACCUCGCAU----GCAUGUGCAACGCAUUCAAGCGUUGUAAUUUGCAAUUUUAUGCGUUUUACACUCGUGCUCGCUGC
----.....(((((((((((((((((((((((((......((((----....))))...)))))).)))))))..)))))..)))))))(((...(((....)))..)))... ( -26.30)
>DroSim_CAF1 11687 104 - 1
GUUUCA--GAUGAAAUCGAUUCAAAGCUA-----CAGCUCUGAAAUCGUCAUAUGAAAUGCAUUCGAGCGGGGUAAUUUGCAAUUUUAUGCGUUUUACAC--GCGUUGCCUCA
((((((--.((((...(((((((.(((..-----..))).)).))))))))).))))))(((.....(((..((((..((((......))))..)))).)--))..))).... ( -30.20)
>DroEre_CAF1 11791 104 - 1
GUUUCA--GAUGAAAUCGAAUCAAAGCUG-----CAGCUCUGAAAUCGUCAUAUGACGUGCAUUCGAGCGCGGUAAUUUGCAAUUUUAUGCGUUUUACAC--GCGUUGCCUCA
(((((.--...)))))(((((((.(((..-----..))).)))...((((....))))....))))((((((((((..((((......))))..)))).)--)))))...... ( -30.00)
>DroYak_CAF1 12177 104 - 1
GUUUCA--GAUGAAAUCGAAUCAAAGCUG-----CAGCUCUGAAAUCAUCAUAUGAAACGCAUUCGAGCGCGGUAAUUUGCAAUUUUAUGCGUUUUACAC--GCGUUGCCUCA
((((((--.((((.......(((.(((..-----..))).))).....)))).))))))(((.....(((((((((..((((......))))..)))).)--))))))).... ( -30.80)
>DroAna_CAF1 21210 99 - 1
GCUUCA--AAUGAAAUCGAAUCAAAGCUG-----CAGCUUUGAAAACGUCAUAUGAAAUGCAGUGGAGCGCGGUAAUGUGCAAUUUUAUGCGUUUUACAC--GCAUUU-----
...(((--.((((.......(((((((..-----..))))))).....)))).)))(((((.((((((((((..(((.....)))...))))))))))..--))))).----- ( -29.20)
>consensus
GUUUCA__GAUGAAAUCGAAUCAAAGCUG_____CAGCUCUGAAAUCGUCAUAUGAAAUGCAUUCGAGCGCGGUAAUUUGCAAUUUUAUGCGUUUUACAC__GCGUUGCCUCA
((((((...((((.......(((.(((((.....))))).))).....)))).)))))).......(((((.((((..((((......))))..))))....)))))...... (-17.02 = -18.97 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:08 2006