Locus 1627

Sequence ID 2L_DroMel_CAF1
Location 4,357,490 – 4,357,582
Length 92
Max. P 0.559237
window2614

overview

Window 4

Location 4,357,490 – 4,357,582
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 81.54
Mean single sequence MFE -30.80
Consensus MFE -21.73
Energy contribution -23.20
Covariance contribution 1.47
Combinations/Pair 1.12
Mean z-score -1.35
Structure conservation index 0.71
SVM decision value 0.05
SVM RNA-class probability 0.559237
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4357490 92 + 22407834
CCCAUGGGAUUUCCCUGGGAGUCCGUUA-GCUGGCCUUGUGUUUCCUCUGGAUGAUUAAAGUAUCUA--AAGA------GAAAGGGCGUGGGAGCCACUCU
((((.(((....)))))))........(-(.((((((..(((((.((((....(((......)))..--.)))------)...)))))..)).)))))).. ( -29.80)
>DroSec_CAF1 8264 92 + 1
CCCAGGGGAUUUCCCUGGGAGUCCGUUA-GCUGGCCUUGUGUUUCCUCUGGAUGAUUAAAAUAUCUA--AAGC------GAAAGGGCGUGGGAGCCACUAU
(((((((.....))))))).......((-(.((((((..((((((((.((((((.......))))))--.)).------)))...)))..)).))))))). ( -33.50)
>DroSim_CAF1 4489 93 + 1
CCCAGGGGAUUUCCCUGGGAGUCCGUUAGGCUGGCCUUGUGUUUCCUCUGUAUGAUUAUAAUAUCUA--AAGC------GAAAGGGCGUGGGAGCCACUCU
(((((((.....)))))))((.((....))))(((((..(((((..((.((..(((......)))..--..))------))..)))))..)).)))..... ( -30.90)
>DroEre_CAF1 4476 92 + 1
CCCAGGGGAUUUCCCUGGGAGUCCGUUA-GUUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUA--AGCA------GUAAGGGCGUGGGAGCCACUUC
(((((((.....)))))))........(-((.(((((..(((((...(((...(((......)))..--..))------)...)))))..)).)))))).. ( -33.80)
>DroYak_CAF1 4656 98 + 1
CCCAGGGGCUUUCCCUGGGAGUUCGUUA-UAUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUA--GGCAGAAACAGAAAGGGCGUGGGAGCCACUCU
(((((((.....))))))).........-..((((((..(((((..((((..((.(((.......))--).))....))))..)))))..)).)))).... ( -35.10)
>DroAna_CAF1 13582 92 + 1
CCGCGGGGAGUUACC-GAACGACCGUUA-GUUGGCCUUGUGCUUCCUCUGGAAAAGUCUUUAAUCUAAAAAGC------GACAAAGCGUGGGAGCG-UUUU
(((.(((((((....-(..((((.....-))))..)....))))))).)))....((((((........))).------)))(((((((....)))-)))) ( -21.70)
>consensus
CCCAGGGGAUUUCCCUGGGAGUCCGUUA_GCUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUA__AAGA______GAAAGGGCGUGGGAGCCACUCU
(((((((.....)))))))............((((((..(((((..((((((((.......))))))............))..)))))..)).)))).... (-21.73 = -23.20 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006