Locus 1625

Sequence ID 2L_DroMel_CAF1
Location 4,352,253 – 4,352,373
Length 120
Max. P 0.531755
window2612

overview

Window 2

Location 4,352,253 – 4,352,373
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -26.05
Consensus MFE -23.65
Energy contribution -23.77
Covariance contribution 0.13
Combinations/Pair 1.06
Mean z-score -1.40
Structure conservation index 0.91
SVM decision value -0.00
SVM RNA-class probability 0.531755
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4352253 120 - 22407834
UCAAAACUAUUCCAAUAAAACCCUUUUCAUUCCGCCGAAUGGUUUCAGUUUCCUUUCCGUUUGAGCAUGAACUUUGAACCCGUCGACCGGACUCCAGGUUACCAAAAGGUAACUAAUCGA
..............................((((.(((..(((((.(((((.(((.......)))...)))))..)))))..)))..)))).....(((((((....)))))))...... ( -22.90)
>DroSim_CAF1 21743 120 - 1
UCAAAACUAUACAAAUAAAACCCUUUUCAUUCCGCCGAAUGGUUUCAGUUUCCUUUCUGUUUGAGUCUGAACUUUGAACCCGUCGACCGGACUCCAGGUUACCAAAAGGUAACUAAUGGA
..............................((((.(((..(((((.(((((...(((.....)))...)))))..)))))..)))..)))).(((((((((((....)))))))..)))) ( -27.80)
>DroEre_CAF1 26391 120 - 1
UCAAAACUAUACCAAUAAAACCCUUUUCAUUCUGCCGAAUGGAUUCAGUUUCCUUUCUGUUUGAGGCUGAACUCUGAACCCGUCGACCGGACUCCAGGUUACCAAAAGGUAACUAAUGGA
(((......................(((((((....)))))))(((((((((..........)))))))))...)))..(((.....)))..(((((((((((....)))))))..)))) ( -28.10)
>DroYak_CAF1 22536 120 - 1
UCAAAACUAAGCCAAUAAAACCCUUUUCAUUCCGUCGAAUGGUUUCAGUUUCCUUUCUGUUUGAGUCUGAACUUUGAACCCGUCAACCGGACUCCAGGUUACCAAAAGGUAACUAAUGGA
..............................((((....((((.(((((.(((..(((.....)))...)))..))))).))))....)))).(((((((((((....)))))))..)))) ( -25.40)
>consensus
UCAAAACUAUACCAAUAAAACCCUUUUCAUUCCGCCGAAUGGUUUCAGUUUCCUUUCUGUUUGAGUCUGAACUUUGAACCCGUCGACCGGACUCCAGGUUACCAAAAGGUAACUAAUGGA
..............................((((.(((.(((.(((((.(((..(((.....)))...)))..))))).))))))..)))).(((((((((((....)))))))..)))) (-23.65 = -23.77 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:02 2006