Locus 1623

Sequence ID 2L_DroMel_CAF1
Location 4,351,696 – 4,351,816
Length 120
Max. P 0.751340
window2610

overview

Window 0

Location 4,351,696 – 4,351,816
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.37
Mean single sequence MFE -39.55
Consensus MFE -33.30
Energy contribution -33.80
Covariance contribution 0.50
Combinations/Pair 1.12
Mean z-score -1.72
Structure conservation index 0.84
SVM decision value 0.48
SVM RNA-class probability 0.751340
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4351696 120 + 22407834
GCUUGCGUGAUUAAUUGCCAUGUUUGCGGCUGUUAUUGUGAGUCCCUGCUGUGUUUGCCAUUUGUCUGGUUGUUGUGGCAUUGGCAAAAAGGAUGCAGCUUUCUCGGGACAAGGCCAGUC
((..(((((.........)))))..))((((....((.((((.....(((((((((((((..((((..........)))).))))).....))))))))...)))).))...)))).... ( -38.10)
>DroSim_CAF1 21199 116 + 1
GCUUGCGUGAUUAAUUGCCAUGUUUGCGGCUGUUAUUGUGAGUC-CUGCUG---UUGCCAUUUGUCUGGUUGGUGUGGCAUUGGCAAAAAGGAUGCAGCUUUCUCGGCGCAAGGCCAGUC
.(((((((...((((.(((........))).))))..((..(((-((....---((((((..((((..........)))).))))))..)))))...)).......)))))))....... ( -36.20)
>DroEre_CAF1 25857 116 + 1
GCUUGCGUGAUUAAUUGCCAUGUUUGUGGCUAUUAUUCUGAGUC-CUGCUG---UUGCCAUUUGUCUGGUUUGUGUGGCAUUGGCAAAAAGGAUGCAGCUUUGCCGGGGCAAGGCCAGUC
...(((..((.((((.(((((....))))).)))).))...(((-((....---((((((..((((..........)))).))))))..))))))))(((((((....)))))))..... ( -42.00)
>DroYak_CAF1 21990 116 + 1
GCUUGCGUGAUUAAUUGCCAUGUUUGUGGCUAUUAUUGCGAGUC-CUGCUG---UUGCCAUUUGUCUGCUUUGUGUGGCAUUGGCAAAAAGGAUGCAGCUUUCUCGCGGCAAGGCCAAUC
.(((((.....((((.(((((....))))).)))).((((((..-..((((---(..((.((((((((((......))))..))))))..))..)))))...)))))))))))....... ( -41.90)
>consensus
GCUUGCGUGAUUAAUUGCCAUGUUUGCGGCUAUUAUUGUGAGUC_CUGCUG___UUGCCAUUUGUCUGGUUGGUGUGGCAUUGGCAAAAAGGAUGCAGCUUUCUCGGGGCAAGGCCAGUC
((..(((((.........)))))..))((((....(((((((...((((.....((((((..((((..........)))).)))))).......))))....)))))))...)))).... (-33.30 = -33.80 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:00 2006