Locus 1622

Sequence ID 2L_DroMel_CAF1
Location 4,351,161 – 4,351,273
Length 112
Max. P 0.772296
window2609

overview

Window 9

Location 4,351,161 – 4,351,273
Length 112
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.59
Mean single sequence MFE -36.20
Consensus MFE -31.65
Energy contribution -31.15
Covariance contribution -0.50
Combinations/Pair 1.10
Mean z-score -1.66
Structure conservation index 0.87
SVM decision value 0.53
SVM RNA-class probability 0.772296
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4351161 112 + 22407834
GGGCAGCUGCAGCUGCACCAGCAACUCCUUGG----CCAAAGACCGAAGAUCAAGGCUCCCAGCAGUGGCGUGUCAAAUGGCCA----ACCAGCUGUUGCCAUCCCAGUAAAUCAAAACC
(((((((....))))).)).(((((..(((((----(((..(((((....(((..((.....))..))))).)))...))))))----...))..))))).................... ( -35.70)
>DroSim_CAF1 20639 112 + 1
GGGCAGCUGCAGCUGCACCAGCAACUCCUUGG----CCAAAGACCGAAGAUCAAGGCUGCCAGCAGUGGCGUGUCAAAUGGCCA----ACCAGCUGUUGCCAUCCCACUAAAUCAAAACC
(((((((....))))).)).(((((..(((((----(((......(.....)..((((((((....))))).)))...))))))----...))..))))).................... ( -36.50)
>DroEre_CAF1 25237 119 + 1
AGGCAGCUGCAGCUGCACCAGCAACUCCUUGGAACGCCGAAGACCGAAGAUCAAGGCUGCCAGCAGUGGCGUGUCAAAUGGCCAAUC-ACCAGCUGUUGCCAUCCUACUAAAUCAAAACC
.((((((.((.((((...)))).......(((.(((((.......(.....)...((((....)))))))))(((....))).....-.))))).))))))................... ( -33.30)
>DroYak_CAF1 21375 116 + 1
GGGCAGCUGCAGCUGCACCAGCAACUCCUUGG----CCAAAGGGCGAAGAUCAAGGCUGCCAGCAGUGGCGUGUCAAAUGGCCUACCAACCAGCUGUUGCCAUCCCACUAAAUCAAAACC
.(((((((...((((...)))).....(((.(----((....))).))).....)))))))...(((((.(((.(((.(((........)))....))).))).)))))........... ( -39.30)
>consensus
GGGCAGCUGCAGCUGCACCAGCAACUCCUUGG____CCAAAGACCGAAGAUCAAGGCUGCCAGCAGUGGCGUGUCAAAUGGCCA____ACCAGCUGUUGCCAUCCCACUAAAUCAAAACC
(((..(((((((((((....))...((.((((....)))).))...........))))).)))).((((((...((..(((........)))..)).))))))))).............. (-31.65 = -31.15 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:59 2006