Locus 1620

Sequence ID 2L_DroMel_CAF1
Location 4,348,284 – 4,348,402
Length 118
Max. P 0.591877
window2603

overview

Window 3

Location 4,348,284 – 4,348,402
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.30
Mean single sequence MFE -28.45
Consensus MFE -23.26
Energy contribution -24.20
Covariance contribution 0.94
Combinations/Pair 1.11
Mean z-score -1.57
Structure conservation index 0.82
SVM decision value 0.12
SVM RNA-class probability 0.591877
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4348284 118 - 22407834
AAACCAGAAUUCUCCUAAGGCGGCUCCACAGCUUUUGAUGAUCUCGCU--CUGUUCUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUCGCUGGGGUGCUUAAAACAAGUGCCAAUUU
...(((((..((((..(((((.........))))).)).))..))((.--..((((...(((((((((......))))))))).))))...)))))((..(((.....)))..))..... ( -27.50)
>DroSim_CAF1 17766 118 - 1
AAACCAGAAUUCUUCUGGGGCGGCUCCACAGCUUUUGAUGAUCUUGCU--CUCUACUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUCGCUGGGGUGCUUAAAACAAGUGCCAAUUU
...(((((.....)))))((((((.((.((((....((.((......)--)))...((.(((((((((......))))))))).)).....)))).)).)))..........)))..... ( -28.20)
>DroEre_CAF1 22241 118 - 1
GAACCAGAAUUUCUCUGAGGCGGCUCCACUGCUUUUGAUGAUCUCGCU--CUGUUCUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUCGCUGGGCUGCUUGAAACAAGUGCCAAUUU
......((..((.((.(((((((.....))))))).)).))..))((.--..((((...(((((((((......))))))))).))))...))..(((.(((((...))))))))..... ( -28.30)
>DroYak_CAF1 17760 120 - 1
GAACCAGAAUUUCGCUGAGGCGGCUCCACUGCUUUUGAUGAUCUCGCUCUCUGUUCUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUUGCUGGGGUGCUUGAAAGAAGUGCCAAUUU
...(((((...((((.(((((((.....))))))).).)))..))((.....((((...(((((((((......))))))))).))))...)))))((..(((.....)))..))..... ( -29.80)
>consensus
AAACCAGAAUUCCUCUGAGGCGGCUCCACAGCUUUUGAUGAUCUCGCU__CUGUUCUCUGUAAAUAUUUUUAUUGAUAUUUAUUGAAUUUCGCUGGGGUGCUUAAAACAAGUGCCAAUUU
...(((((..((.((.(((((((.....))))))).)).))..))((.....((((...(((((((((......))))))))).))))...)))))(((((((.....)))))))..... (-23.26 = -24.20 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:53 2006