Locus 1619

Sequence ID 2L_DroMel_CAF1
Location 4,347,703 – 4,347,794
Length 91
Max. P 0.738165
window2602

overview

Window 2

Location 4,347,703 – 4,347,794
Length 91
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 82.47
Mean single sequence MFE -20.10
Consensus MFE -16.41
Energy contribution -15.65
Covariance contribution -0.77
Combinations/Pair 1.28
Mean z-score -1.68
Structure conservation index 0.82
SVM decision value 0.44
SVM RNA-class probability 0.738165
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4347703 91 - 22407834
UAGUUACAACAUACAUAUUAUUUGUAGCAU------AUACCCUGUACUUAAAAUGUGGAUCCCUGUAUUCCCUGGGCACGUGUAGA---CUCACUCAUCA
..(((((((.(((.....))))))))))..------.......((.((....(((((...(((..........))))))))..)))---).......... ( -13.10)
>DroSec_CAF1 16399 96 - 1
UAGUUGCACUACUCAAAUUAUUUGUAGCAUACAAGUAUACCCUGCAUUUAAAAUGGGGAUCCCUGUAUCCCCUUGGCACGUGCAGU---CUCACUCA-CU
.((((((((...((((.(((..(((((.(((....)))...)))))..)))...((((((......))))))))))...)))))).---))......-.. ( -22.60)
>DroSim_CAF1 17174 94 - 1
UAGUUACACUACACAAAUUACUUGUAGCAU------AUACCCUGCAUUUAAAAUGGGGAUCCCUGUAUCCCCUUGGCACGUGUAGUAGACUCACUCAGCA
.((((..(((((((...(((..(((((...------.....)))))..)))...((((((......)))))).......))))))).))))......... ( -24.60)
>consensus
UAGUUACACUACACAAAUUAUUUGUAGCAU______AUACCCUGCAUUUAAAAUGGGGAUCCCUGUAUCCCCUUGGCACGUGUAGU___CUCACUCA_CA
..((((((..............)))))).............((((((.......((((((......)))))).......))))))............... (-16.41 = -15.65 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:52 2006