| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,344,234 – 4,344,348 |
| Length | 114 |
| Max. P | 0.835108 |
| Location | 4,344,234 – 4,344,348 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.06 |
| Mean single sequence MFE | -31.83 |
| Consensus MFE | -24.00 |
| Energy contribution | -23.17 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4344234 114 + 22407834 A-UAU-GUUUAACUCAUGUUA--CUCCUUAUUAUUUAGGUGCCAUGGUAGCCAUCUAUGGAAUGGAUAGGGCCAAGAUGCAGUGCAAUCAAAUGUACUGCCACUAUCGAGUGCCCAAG .-...-...((((....))))--........((((((....((((((.......))))))..))))))(((((..(((((((((((......))))))))....)))..).))))... ( -31.20) >DroPse_CAF1 13044 113 + 1 AGUCGCCUAUAAUAGAGGAAA--AUCUC---CUUUCAGGCGCCAUGGUGGCCAUCUAUGGCAUGGACCGCGCCAAGCUGCAGUGCAACCAAAUGUACUGCCAUUACCGAGUGCCCAAG .(((((((.....((((((..--...))---)))).))))(((((((.......)))))))...))).(((((.....((((((((......)))))))).......).))))..... ( -37.80) >DroEre_CAF1 13194 114 + 1 A-UAU-GCGUAACUCACAUUA--UUCUUAAUCUUUCAGGUGCCAUGGUGGCCAUCUAUGGAAUGGAUCGGGCCAAGAUGCAGUGCAAUCAAAUGUACUGCCACUACCGCGUGCCCAAG .-...-...............--..............((.(((.((((((((((((((...))))))..)))).....((((((((......))))))))....)))).).))))... ( -30.20) >DroWil_CAF1 13990 110 + 1 A-UU--UC-----UUAUGUCAAUAUCUCAAUUCUCUAGGCGCCAUGGUAGCCAUCUAUGGCAUGGAUCGGGCCAAAAUGGAAUGCAAUCAAAUGUAUUGCCAUUAUCGUGUACCCAAA .-..--..-----....................((((...(((((((.......))))))).))))..(((.((.(((((((((((......)))))).)))))....))..)))... ( -25.10) >DroYak_CAF1 13526 116 + 1 ACUAUCUCUUAACUUACAUAA--AUCUGUAUUAUUCAGGUGCCAUGGUAGCCAUCUAUGGAAUGGAUCGGGCCAAGAUGCAGUGCAAUCAAAUGUACUGCCACUACCGAGUGCCCAAG .((((................--(((((.......))))).((((((.......)))))).))))...((((......((((((((......)))))))).(((....)))))))... ( -29.90) >DroPer_CAF1 13048 113 + 1 AGCCGCCUAUAAUAGAGGAAA--AUCUC---CUUUCAGGCGCCAUGGUGGCCAUCUAUGGCAUGGACCGCGCCAAGCUGCAGUGCAACCAAAUGUACUGCCAUUACCGAGUGCCCAAG ..((((((.....((((((..--...))---)))).))))(((((((.......)))))))..))...(((((.....((((((((......)))))))).......).))))..... ( -36.80) >consensus A_UAU_CCAUAACUCACGUAA__AUCUC_AUCUUUCAGGCGCCAUGGUAGCCAUCUAUGGAAUGGAUCGGGCCAAGAUGCAGUGCAAUCAAAUGUACUGCCACUACCGAGUGCCCAAG .....................................(((((..(((((((((((....).)))).............((((((((......))))))))..)))))).))))).... (-24.00 = -23.17 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:44 2006