Locus 1613

Sequence ID 2L_DroMel_CAF1
Location 4,339,213 – 4,339,311
Length 98
Max. P 0.500000
window2590

overview

Window 0

Location 4,339,213 – 4,339,311
Length 98
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 88.96
Mean single sequence MFE -21.68
Consensus MFE -17.71
Energy contribution -18.15
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.34
Structure conservation index 0.82
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4339213 98 + 22407834
CCCACAUCCAUUUCCCGC-----------------CCACAUAUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUUUUCCUUAAUAACGUAAAUGGUGCGGGAAUUAAAGCCACAU
...........(((((((-----------------........((((((((..........(((...)))..(((.........))))))))))).)))))))............ ( -22.30)
>DroSec_CAF1 8128 97 + 1
CCCACAUCCAUUUCCCGC-----------------CCACAUAUCCGUUUGCAUAUUUGAUUGGCUUUGCCGCGUU-UCCUUAAUAACGUAAAUGGUGCGGGAAUUAAAGCCACAU
...........(((((((-----------------........((((((((..........(((...)))..(((-........))))))))))).)))))))............ ( -23.10)
>DroSim_CAF1 8746 97 + 1
CCCACAUCCAUUUCCCGC-----------------CCACAUAUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUU-UCCUUAAUAACGUAAAUGGUGCGGGAAUUAAAGCCACAU
...........(((((((-----------------........((((((((..........(((...)))..(((-........))))))))))).)))))))............ ( -23.10)
>DroEre_CAF1 8196 113 + 1
-CCACAUCCAUUUCCCGCCACCCGCCAUCCGCCCCCCACACUUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUU-UCCCUAAUAACGUAAAUGGUCCGGGCAUUAAAGCCACAU
-.............................((((.........((((((((..........(((...)))..(((-........)))))))))))...))))............. ( -18.80)
>DroYak_CAF1 8434 97 + 1
CCCACAACCAUUUCCCGC-----------------CCACAUGUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUU-UCCCUAAUAGCGUAAAUGGUCCGGGAAUUAAAGCCACAU
...........((((((.-----------------......(.((((((((..........(((...)))((...-.........)))))))))).)))))))............ ( -21.11)
>consensus
CCCACAUCCAUUUCCCGC_________________CCACAUAUCCGUUUGCAUAUUUGAUUGGCCUUGCCGCGUU_UCCUUAAUAACGUAAAUGGUGCGGGAAUUAAAGCCACAU
...........(((((((.........................((((((((..........(((...)))..(((.........))))))))))).)))))))............ (-17.71 = -18.15 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:41 2006