Locus 161

Sequence ID 2L_DroMel_CAF1
Location 473,777 – 473,874
Length 97
Max. P 0.912312
window248

overview

Window 8

Location 473,777 – 473,874
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 79.13
Mean single sequence MFE -42.32
Consensus MFE -27.55
Energy contribution -28.50
Covariance contribution 0.95
Combinations/Pair 1.41
Mean z-score -2.08
Structure conservation index 0.65
SVM decision value 1.08
SVM RNA-class probability 0.912312
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 473777 97 + 22407834
UAAUCCCGGGCAGCAAAUGGGCGUGGGCGUUGGCAUGCCUAACCAAAUGGUAGGACCGGGACCGAACAGUGGACCCGCCGUUGGCGGAGCUGGCGGA
...((((((........((((((((........))))))))(((....)))....))))))(((..((((....(((((...))))).)))).))). ( -41.60)
>DroPse_CAF1 21826 85 + 1
CAAUGCUGGCCAGCAGAUGGG---------UGGCAUGCCUAAUCAAAUGGUGGGCCCUGGGCCGAACAGUGGUCCCGCAG---GUGGGACCGGUGGA
..((((((.(((.....))).---------))))))(((.........))).((((...))))...((.((((((((...---.)))))))).)).. ( -36.10)
>DroSec_CAF1 19634 97 + 1
AAAUCCCGGCCAGCAGAUGGGCGUGGGCGUUGGCAUGCCCAACCAAAUGGUAGGACCGGGACCGAUCAGCGGAUUCGCCGUCGGCGGAGUUGGCGGA
...(((((((((.((..(((...(((((((....))))))).)))..)).).)).))))))(((.(((((...((((((...)))))))))))))). ( -46.60)
>DroEre_CAF1 20118 97 + 1
AAAUCCCGGUCAGCAGAUGGGCGUGGGCGUUGGCAUGCCCAACCAAAUGGUAGGACCGGGACCAAACAGUGGACCCGCUGUCGGCGGAGCCGUCGGA
...((((((((......((((((((........))))))))(((....)))..))))))))((..((((((....)))))).((((....)))))). ( -47.80)
>DroYak_CAF1 19794 97 + 1
AAAUCCCGGGCAACAGAUGGGCGUGGGCGUUGGCAUGCCUAACCAAAUGGUAGGACCGGGACCGAACAGUGGACCUGCUGUCGGCGGAGCCGUCGGA
...((((((.(..((..(((...(((((((....))))))).)))..))....).))))))(((((((((......)))))((((...)))))))). ( -39.50)
>DroAna_CAF1 24540 88 + 1
CAAUGCUGGCCAACAGAUGGGC---------GGCAUGCCCAACCAGAUGGUGGGCCCGGGUCCGAACAGUGGUCCCGCCGUCGUCGGGGCAGGUGGU
..((((((.(((.....))).)---------)))))((((.....(((((((((.(((.((....))..))).)))))))))....))))....... ( -42.30)
>consensus
AAAUCCCGGCCAGCAGAUGGGCGUGGGCGUUGGCAUGCCCAACCAAAUGGUAGGACCGGGACCGAACAGUGGACCCGCCGUCGGCGGAGCCGGCGGA
...((((((((......((((((((........))))))))(((....))).)).))))))(((.....(((..((((.....))))..))).))). (-27.55 = -28.50 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:43 2006