Locus 1606

Sequence ID 2L_DroMel_CAF1
Location 4,322,637 – 4,322,736
Length 99
Max. P 0.843468
window2578

overview

Window 8

Location 4,322,637 – 4,322,736
Length 99
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 89.04
Mean single sequence MFE -27.54
Consensus MFE -22.54
Energy contribution -23.34
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.82
SVM decision value 0.76
SVM RNA-class probability 0.843468
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4322637 99 + 22407834
UCAAACGUCUGU-CAAUCCUUCAAGCGCCACCCUUAAGUCCUAACCAG-------AUCAUAUGGGAUUAUCCCAGGGAGUAGGUCUUAAAGCUCGGUGCUUGUUGCA
............-........((((((((..(.(((((.((((.....-------.((...((((.....))))..)).)))).))))).)...))))))))..... ( -28.50)
>DroSec_CAF1 76733 96 + 1
UC---CGUCUGU-CAAUCCUUCAAGCGCCACCAUUAAGUCCUAACCAA-------AUCAUAUGGGAUUAUCCCAGGGAGUAGGUCUUAAAGCUCGGUGCUUAUUGCA
..---.......-.........(((((((..(.(((((.((((.....-------.((...((((.....))))..)).)))).))))).)...)))))))...... ( -26.20)
>DroSim_CAF1 80134 96 + 1
UC---CGUCUGU-CAAUCCUUCAAGCGCCACCAUUAAGUCCUAACCAG-------AUCAUGUGGGAUUAUCCCAGGGAGUAGGUCUUAAAGCUCGGUGCUUGUUGCA
..---.......-........((((((((..(.(((((.((((.....-------.((.(.((((.....)))).))).)))).))))).)...))))))))..... ( -28.00)
>DroEre_CAF1 73068 95 + 1
UC---CGUCUGU-CAUUCCUUCAAGCGCCACCAUUAAGUCCUAACCAG-------AUCAGAUG-GAUUAUCCCAAGGAGUAGGUCUUAAAGUUCGGUGCUUGUUGCG
..---.......-........((((((((..(.(((((.((((.(((.-------......))-)....(((...))).)))).))))).)...))))))))..... ( -24.30)
>DroYak_CAF1 78785 104 + 1
UC---CGUCUGUCCAAUCCUUCAAGCGCCACCAUUAAGUCCUAACCAAAGUCCUAAUCAGAUGGGAUUAUCCCCAGGAGUUGGACUUAAAGUUCGGUGCUUGUUGUG
..---................((((((((..(.((((((((.(((...(((((((......))))))).(((...)))))))))))))).)...))))))))..... ( -30.70)
>consensus
UC___CGUCUGU_CAAUCCUUCAAGCGCCACCAUUAAGUCCUAACCAG_______AUCAUAUGGGAUUAUCCCAGGGAGUAGGUCUUAAAGCUCGGUGCUUGUUGCA
.....................((((((((..(.(((((.((((.............((...((((.....))))..)).)))).))))).)...))))))))..... (-22.54 = -23.34 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:30 2006