Locus 1602

Sequence ID 2L_DroMel_CAF1
Location 4,302,526 – 4,302,616
Length 90
Max. P 0.526385
window2570

overview

Window 0

Location 4,302,526 – 4,302,616
Length 90
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 86.67
Mean single sequence MFE -40.52
Consensus MFE -28.21
Energy contribution -30.77
Covariance contribution 2.56
Combinations/Pair 1.06
Mean z-score -2.05
Structure conservation index 0.70
SVM decision value -0.01
SVM RNA-class probability 0.526385
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4302526 90 + 22407834
CCCUGGCACACUACGAAAAUCCUAUGUAUGAGUGU--------GUGAGGG--GGGGGGGGGGGCAGAGAUGCCACCCACUUUCCACCGCCCCAGCACUUU
((((.(((((((..................)))))--------)).))))--((..(((((((((....)))).))).))..))...((....))..... ( -38.37)
>DroSec_CAF1 56655 100 + 1
CCCUGGCACACUACAAAAAUCCUCUGUAUGUGUGUGGGCGCGUGUGAGUGUGUGUGGGGCGGGCGGUGAUGCCACCCACUUUCCACCGCCCCAGCACUUU
..(((((((((((((.........)))).))))))(((((.(((.(((.....(((((...((((....)))).))))).))))))))))))))...... ( -41.60)
>DroSim_CAF1 58148 100 + 1
CCCUGGCACACUACAAAAAUCCCCUGUAUGUGUGUGGGCGCGUGUGAGUGUGUGUGGGGCGGGCGGUGAUGCCACCCACUUUCCACCGCCCCAGCACUUU
..(((((((((((((.........)))).))))))(((((.(((.(((.....(((((...((((....)))).))))).))))))))))))))...... ( -41.60)
>consensus
CCCUGGCACACUACAAAAAUCCUCUGUAUGUGUGUGGGCGCGUGUGAGUGUGUGUGGGGCGGGCGGUGAUGCCACCCACUUUCCACCGCCCCAGCACUUU
..(((((((((((((.........)))).))))))(((((.(((.(((.....(((((...((((....)))).))))).))))))))))))))...... (-28.21 = -30.77 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:22 2006