Locus 1601

Sequence ID 2L_DroMel_CAF1
Location 4,299,664 – 4,299,770
Length 106
Max. P 0.533963
window2569

overview

Window 9

Location 4,299,664 – 4,299,770
Length 106
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 90.99
Mean single sequence MFE -21.66
Consensus MFE -17.74
Energy contribution -17.62
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.32
Structure conservation index 0.82
SVM decision value 0.00
SVM RNA-class probability 0.533963
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4299664 106 + 22407834
UGCCUUGGUUCUCAUUCAACCAUCAGCCCCAAUAUCCUCCGGCCUGAAAUCGGGGGACUAUCCUGAUCCUGAACCAC--GACACGAACCCAAAAUCACCAGCCAACCA
((.(.((((((...........((((.((...........)).)))).(((((((.....)))))))...)))))).--).))......................... ( -19.50)
>DroSec_CAF1 53812 106 + 1
CGCCUUGGUUCUCAUUCAACCAUCAGCCCCUAUAUCCUCCGGCCUGAAAUCUGGGGACCAUCCCGAUCCUGAACCCC--GACCCGGACCCAAAAUCACCAGCCAACCA
.((...(((((....((.....((((.((...........)).))))......(((.....)))))....)))))((--(...)))..............))...... ( -19.30)
>DroSim_CAF1 55270 106 + 1
CGCCUUGGUUCUCAUUCAACCAUCAGCCCCUAUAUCCUCCGGCCUGAAAUCGGGGGACCAUCCUGAUCCUGAACCCC--GACCCGGACCCAAAAUCACCAGCCAACCA
....((((((....((((...(((((........((((((((.......)))))))).....)))))..))))..((--(...))).............))))))... ( -21.62)
>DroEre_CAF1 50002 99 + 1
UGCCUUGGUUCUCAUUCAACCAUCAGCCCCU--AUCCUCCGGCCUGAAAUCGGGGGACCAUCCCGAUCCUGAACCCC--GACCUGGACCCAAAAUCAC----CAA-AA
..((..((((....((((....((((.((..--.......)).)))).(((((((.....)))))))..))))....--)))).))............----...-.. ( -21.50)
>DroYak_CAF1 55305 105 + 1
CGCCUUGGUUCUCAUUCAACCAUCAGCCCCU--AUCCUCCGGCCUGAAAUCGGGGGACCAUCCCGAUCCUGAAUCCCGCGACCCGGACCCAAAAUCACAAGCCAA-GA
...(((((((...(((((....((((.((..--.......)).)))).(((((((.....)))))))..))))).(((.....))).............))))))-). ( -26.40)
>consensus
CGCCUUGGUUCUCAUUCAACCAUCAGCCCCUAUAUCCUCCGGCCUGAAAUCGGGGGACCAUCCCGAUCCUGAACCCC__GACCCGGACCCAAAAUCACCAGCCAACCA
......(((((...........((((.((...........)).)))).(((((((.....))))))).................)))))................... (-17.74 = -17.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:21 2006