Locus 160

Sequence ID 2L_DroMel_CAF1
Location 472,337 – 472,439
Length 102
Max. P 0.814204
window247

overview

Window 7

Location 472,337 – 472,439
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 85.29
Mean single sequence MFE -31.24
Consensus MFE -19.12
Energy contribution -21.32
Covariance contribution 2.20
Combinations/Pair 1.10
Mean z-score -2.68
Structure conservation index 0.61
SVM decision value 0.66
SVM RNA-class probability 0.814204
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 472337 102 + 22407834
GGCGUGUGAGAGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUUCUUUUACACGGAAAGAAAAAUAUUGGUUAGCCUAUGUGUAAUCUAGGUUAAGAUG
..(((((((((((((((.((((..(((....)))..)))).)))).)))))))))))................((((((((.(......))))))))).... ( -33.50)
>DroSec_CAF1 18172 102 + 1
GGCGUGUGAGGGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUUUUUUUACACGGAAAGAAAACUUUUGGUUAGCCUAUGUGUAAACUAGGUUAAAAUG
..(((((((((((((((.((((..(((....)))..)))).)))).)))))))))))(((((....)))))..((((((((.((....)))))))))).... ( -33.20)
>DroSim_CAF1 18125 102 + 1
GGCGUGUGAGGGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUUUUUUUACACGGAAAGAAAACUUUUGGUUAGCCUAUGUGUAAACUAGGUUAAAAUG
..(((((((((((((((.((((..(((....)))..)))).)))).)))))))))))(((((....)))))..((((((((.((....)))))))))).... ( -33.20)
>DroEre_CAF1 18640 95 + 1
UGUGCGCGAGUGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUCGUUUUACACUGAAAGAAAACCAUUGCUUUGCCUAUGUGCAAUCUAA-------UG
..((((((.((((((....)))))).(((((((......(((((........))))).......)))))))..........))))))......-------.. ( -25.42)
>DroYak_CAF1 18435 101 + 1
UGGGUGCGAGGGAGAUAGCUCUCACAGGUGGUUG-AGGGGGUGUCUCUUUUUACACGAAAAGAAAACCUUUGCCUUGGCUAUGUACAAUCUAAUUUUAAAUG
...(((((((((......)))))....(((((..-(((((((...(((((((....)))))))..))))...)))..)))))))))................ ( -30.90)
>consensus
GGCGUGUGAGGGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUUUUUUUACACGGAAAGAAAACUUUUGGUUAGCCUAUGUGUAAUCUAGGUUAAAAUG
...((((((((((((((.((((..(((....)))..)))).)))))).)))))))).................((((((((.(......))))))))).... (-19.12 = -21.32 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:42 2006