Locus 1599

Sequence ID 2L_DroMel_CAF1
Location 4,298,500 – 4,298,618
Length 118
Max. P 0.860286
window2567

overview

Window 7

Location 4,298,500 – 4,298,618
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 93.31
Mean single sequence MFE -24.64
Consensus MFE -20.88
Energy contribution -21.12
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.85
SVM decision value 0.83
SVM RNA-class probability 0.860286
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4298500 118 + 22407834
AUUAAGCUGACGCUUACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUCUGCAUAACCAUAGUUUCCGGACCGCACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA
..(((((....)))))...((((..(((((...(((...((((..(((...((.........))....)))..)))).((((((.......)))))))))..)))))...)))).... ( -27.50)
>DroSec_CAF1 52655 118 + 1
AUUAAGCUGACGCUUACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUUUGCAUAACCAUAGUUUCCGGACCGCACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA
..(((((....)))))...((((..(((((...(((...((((..(((...((.........))....)))..)))).((((((.......)))))))))..)))))...)))).... ( -27.50)
>DroSim_CAF1 54113 118 + 1
AUUAAGCUGACGCUUACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUCUGCAUAACCAUAGUUUCCGGACCGCACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA
..(((((....)))))...((((..(((((...(((...((((..(((...((.........))....)))..)))).((((((.......)))))))))..)))))...)))).... ( -27.50)
>DroEre_CAF1 48871 106 + 1
AUU------------ACAAUUUCUCUCAGUGACUUCUGAGUGCAUUCCUCUGCAUAACCAUAGUUUCCGAACCACACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA
...------------....((((..(((((....(((..(((((......))))).......................((((((.......)))))))))..)))))...)))).... ( -18.30)
>DroYak_CAF1 54113 118 + 1
AUUAAGCUGACGCUAACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUCUGCAUAACCGUAGUUUCCAAACCACACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA
....(((....))).....((((..(((((...(((...(((((......)))))....((.(((....))).))...((((((.......)))))))))..)))))...)))).... ( -22.40)
>consensus
AUUAAGCUGACGCUUACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUCUGCAUAACCAUAGUUUCCGGACCGCACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA
..(((((....)))))...((((..(((((...(((...(((((......))))).......................((((((.......)))))))))..)))))...)))).... (-20.88 = -21.12 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:19 2006