Locus 1598

Sequence ID 2L_DroMel_CAF1
Location 4,297,505 – 4,297,596
Length 91
Max. P 0.752126
window2566

overview

Window 6

Location 4,297,505 – 4,297,596
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 96.70
Mean single sequence MFE -29.40
Consensus MFE -26.38
Energy contribution -26.58
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.48
SVM RNA-class probability 0.752126
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4297505 91 - 22407834
GUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCAAACCGCUCUUGAUUGGAACGUUGUCCGGCAAA
.((((((((((..((((.....)))).((((((((((((.(....).))))))).(((.....)))....)))))...)))).)))))).. ( -26.90)
>DroSec_CAF1 51651 91 - 1
GUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCAAACCGCUCUUGAUUGGGACGUUGUCCGGCAAA
.((((((((((..((((.....)))).((((((((((((.(....).))))))).(((.....)))....)))))...)))).)))))).. ( -27.10)
>DroSim_CAF1 53111 91 - 1
UUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCAAACCGCUCUUGAUUGGGACGUUGUCCGGCAAA
(((((((((((..((((.....)))).((((((((((((.(....).))))))).(((.....)))....)))))...)))).))))))). ( -27.80)
>DroEre_CAF1 47919 91 - 1
GUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCGAACCGCUCUUGAUUGGGGCGUUGUCCGGCAAA
.((((((((((..((((..((..........((((((((.(....).)))))))).)).))))(((((.....))))))))).)))))).. ( -31.50)
>DroYak_CAF1 53104 91 - 1
GUGUCGGUAAUAGGGUUAAGCAAACUACCCAUGUCCGAAGGCAAUUGUUCGGGCGGGCAGACCGCUCUUGAUUGGGGCGUUGUCCGGCAAA
.((((.......((((..........))))..(((((((.(....).)))))))((((((..((((((.....)))))))))))))))).. ( -33.70)
>consensus
GUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCAAACCGCUCUUGAUUGGGACGUUGUCCGGCAAA
.((((((((((..((((.....)))).((((((((((((.(....).))))))).(((.....)))....)))))...)))).)))))).. (-26.38 = -26.58 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:18 2006