Locus 1595

Sequence ID 2L_DroMel_CAF1
Location 4,279,591 – 4,279,700
Length 109
Max. P 0.599092
window2562

overview

Window 2

Location 4,279,591 – 4,279,700
Length 109
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 88.28
Mean single sequence MFE -37.80
Consensus MFE -27.26
Energy contribution -27.14
Covariance contribution -0.12
Combinations/Pair 1.16
Mean z-score -1.76
Structure conservation index 0.72
SVM decision value 0.13
SVM RNA-class probability 0.599092
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4279591 109 + 22407834
UG--GGGCAGCAAACAAGUUUGGUGGAGGAUGAAGCCACCGGACGAGAGGGAUAUCAUUCACUCCACCAAAGACGGCAUCUUCGUCAUCGCA--UCCCU------CCGAUUCCACGGAA
.(--(((..((.......(((((((((((((((..((..(......)..))...))).)).))))))))))(((((.....)))))...)).--))))(------(((......)))). ( -39.10)
>DroSec_CAF1 34030 104 + 1
UG--GGGCAGCAAACAAGUUUGGUGGAGG---AAGCCACCGGACGA--GGGAUAUCAUUCACUCCACCGAAGACGGCAUCUUCGUCAUCGCA--UCCCU------CCGACUCCACGGAA
((--((((.........(((((((((...---...)))))))))((--(((((....(((........)))(((((.....))))).....)--)))))------).).)))))..... ( -36.50)
>DroSim_CAF1 35397 104 + 1
UG--GGGCAGCAAACAAGUUUGGUGGAGG---AAGCCACCGGACGA--GGGAUAUCAUUCACUCCACCAAAGACGGCAUCUUCGUCAUCGCA--UCCCU------CCGACUCCACGGAA
.(--(((..((.......(((((((((((---((.((..(....).--.))......))).))))))))))(((((.....)))))...)).--))))(------(((......)))). ( -36.50)
>DroEre_CAF1 29857 108 + 1
UG--GGGCAGCAAACCAGUUUGGUGGUGG---AAGCCACCGGACGA--GGGCUAUCAUUCACUCCGCCAAAGACGGCAUCUUCGUCAUCGCU--UCC--CUUCCUUCGACUCCACGGAA
.(--(((.(((......((((((((((..---..))))))))))((--.(((.............)))...(((((.....))))).)))))--.))--))...((((......)))). ( -35.92)
>DroYak_CAF1 34532 114 + 1
AGGGGGGCAGCAAACAAGUUUGGUGGAGG---AAGCCACCGGACGA--GGGAUAUCAUUCACUCCGCCAAAGACGACAUCUUCGUCAUCGAGUAUCCCUCCUCCGCCGACUCCACGGAA
.((((((..((.......(((((((((((---((.((..(....).--.))......))).))))))))))(((((.....))))).....))..))))))((((.........)))). ( -41.00)
>consensus
UG__GGGCAGCAAACAAGUUUGGUGGAGG___AAGCCACCGGACGA__GGGAUAUCAUUCACUCCACCAAAGACGGCAUCUUCGUCAUCGCA__UCCCU______CCGACUCCACGGAA
....(((..((.......((((((((((..........((........))...........))))))))))(((((.....)))))...))....))).......(((......))).. (-27.26 = -27.14 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:14 2006