| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,277,685 – 4,277,776 |
| Length | 91 |
| Max. P | 0.867559 |
| Location | 4,277,685 – 4,277,776 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 69.09 |
| Mean single sequence MFE | -10.87 |
| Consensus MFE | -6.89 |
| Energy contribution | -7.00 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.867559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4277685 91 - 22407834 ----------------------GUGUGCACAAGCACACUAAUAAAAAAUGCUUAUCCUCCACUUAAAAUGUAAAUAAAACAAAAUUAUAAUCUCACCUUGAAUAACUUACGAA ----------------------((((((....))))))........................................................................... ( -9.10) >DroSim_CAF1 33462 84 - 1 ----------------------GUGUGCACAAGUACACUAACAAAAAAGGCUUAUUCUCUACUUAUGAAGUAAAUAAAACGAAAUUAUAAUCUCA-------UAAUUUUCGAA ----------------------((((((....))))))..........(..(((((..((.(....).))..)))))..)((((((((......)-------))))))).... ( -12.20) >DroEre_CAF1 27878 113 - 1 AAUUUCUAUGUACACCACUCUUGGGUGCACAAGCACACUUACAAAAAAAGCUUAGCCUUUACUUAUAAUGCAAAUAAAACAUAAUCAUAAUCUCACCUUGUAUAAUUUUCAAA ........(((((((((....)))((((....))))..............................................................))))))......... ( -11.30) >consensus ______________________GUGUGCACAAGCACACUAACAAAAAAAGCUUAUCCUCUACUUAUAAUGUAAAUAAAACAAAAUUAUAAUCUCACCUUG_AUAAUUUUCGAA ......................((((((....))))))........................................................................... ( -6.89 = -7.00 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:13 2006