Locus 1593

Sequence ID 2L_DroMel_CAF1
Location 4,273,221 – 4,273,311
Length 90
Max. P 0.588758
window2560

overview

Window 0

Location 4,273,221 – 4,273,311
Length 90
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 87.14
Mean single sequence MFE -27.68
Consensus MFE -18.74
Energy contribution -19.74
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.68
SVM decision value 0.11
SVM RNA-class probability 0.588758
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4273221 90 + 22407834
GUGGAAA-AACCCACAA----AGGCGCAUCGGACUGCCAGAUGCCACAAACGACAAGUGGGU----------GGCCAAAGGUACAUAGAAGGUACAAGGUCUUAG
((((...-...))))..----.((((((((((....)).)))))(((..((.....))..))----------))))....((((.......)))).......... ( -26.40)
>DroSec_CAF1 27795 90 + 1
GGGGAAA-AACCCACAA----AGGCGCAUCGGGCUGCCAGAUGCCACAAACGACAAGUGGGU----------AGCCAAAGGUACAUAGAAGGUACAAGGUCUUAG
(((....-..)))...(----((((......(((((((...((.(......).))....)))----------))))....((((.......))))...))))).. ( -25.60)
>DroSim_CAF1 29047 90 + 1
GGGGAAA-AAGCCACAA----AGGCGCAUCGGGCUGCCAGAUGCCACAAACGACAAGUGGGU----------GGCCAAAGGUACAUAGAAGGUACAAGGUCUUAG
.......-(((((....----.((((((((((....)).)))))(((..((.....))..))----------))))....((((.......))))..)).))).. ( -24.80)
>DroEre_CAF1 23395 101 + 1
GGGGAAAAAACCCACAA----AGGCGCAUCGGACUGCCAGAUGCCACAAACGGCAAGUGGGUGGCAAAAGCUGGCCAAAGGUACAUACAAGGUACAAGGUCUUAC
(((.......)))....----.........((((((((((.((((((..((.....))..))))))....))))).....((((.......))))..)))))... ( -33.00)
>DroYak_CAF1 27983 98 + 1
GGUGAAAGGAGCCACAAAGAAAGGCGCAUCGGACUGCCAGAUGCCACAAACGGCAAGUGGGUGG-------UGGCCAAAGGUACAUACAAGGACCAAGGUCUUGG
.(((....(.(((((..........(((((((....)).)))))(((..((.....))..))))-------))))).....))).....(((((....))))).. ( -28.60)
>consensus
GGGGAAA_AACCCACAA____AGGCGCAUCGGACUGCCAGAUGCCACAAACGACAAGUGGGU__________GGCCAAAGGUACAUAGAAGGUACAAGGUCUUAG
.........((((((........(.(((((((....)).)))))).(....)....))))))..........((((....((((.......))))..)))).... (-18.74 = -19.74 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:12 2006