Locus 1591

Sequence ID	2L_DroMel_CAF1
Location	4,271,107 – 4,271,200
Length	93
Max. P	0.963211

overview

Window 6

Location	4,271,107 – 4,271,200
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	90.11
Mean single sequence MFE	-27.06
Consensus MFE	-20.86
Energy contribution	-21.86
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-2.45
Structure conservation index	0.77
SVM decision value	1.55
SVM RNA-class probability	0.963211
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4271107 93 + 22407834
GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGAAGCGCAGACCUAUCUGCAACAAUGCAGUGGAAACAA
..........((((...(((((((((.....)))))))))...........((((.....(((((....))))).....))))))))...... ( -28.30)
>DroSec_CAF1 25685 93 + 1
GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGAAGCGCAGACCUAGCUGCAAAAAUGCAGUAGAAACAA
.....((((........(((((((((.....)))))))))...(((((...(((......)))..)))))(((((....)))))))))..... ( -26.80)
>DroSim_CAF1 26959 93 + 1
GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGAAGCGCAGACCUAGCUGCAAAAAUGCAGUGGAAACAA
..........((((...(((((((((.....)))))))))...(((((...(((......)))..))))).((((....))))))))...... ( -28.70)
>DroEre_CAF1 21233 93 + 1
GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGCAGCGCAGACCUAUUUGCGAAAGUGCAGUGGAAACAA
..........((((...(((((((((.....)))))))))...........((((....((((((....))))))....))))))))...... ( -28.30)
>DroYak_CAF1 24268 81 + 1
GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGUGUAUAUCUGGGCGCUGCAGAAGCGCA------------AAAGUGCAGUGGCAACAA
..........((((....(((((((((((.....))))....))))))).........((((.------------...)))).))))...... ( -23.20)
>consensus
GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGAAGCGCAGACCUAGCUGCAAAAAUGCAGUGGAAACAA
..........((((...(((((((((.....)))))))))..((((.((.........)).))))..................))))...... (-20.86 = -21.86 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:08 2006