Locus 1588

Sequence ID 2L_DroMel_CAF1
Location 4,265,957 – 4,266,070
Length 113
Max. P 0.767297
window2553

overview

Window 3

Location 4,265,957 – 4,266,070
Length 113
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.10
Mean single sequence MFE -26.05
Consensus MFE -15.34
Energy contribution -16.20
Covariance contribution 0.86
Combinations/Pair 1.04
Mean z-score -1.88
Structure conservation index 0.59
SVM decision value 0.52
SVM RNA-class probability 0.767297
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4265957 113 + 22407834
UGCU--UUCGUCCUGCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCCUUUGCAUUUUUUGCGCAUUUGCCUC
.((.--........)).(((((((((((((((....))))))))..((((.(((((((.(((..((.....))....-))-).))))))).))..(((.....)))))))))))).. ( -29.70)
>DroVir_CAF1 4379 100 + 1
CACU------UUUCUGUGGCAAGUGCAAAGUGCUUACAUUUUUCUGGCAACGGAAAUUCGCAUUGCUUCCGGU-UUUUUGCUUCAACUCCUUUUUACUUCGACUGCG----------
(((.------.....)))(((.((.(.(((((........((((((....))))))...(((..((.....))-....))).............))))).)))))).---------- ( -19.20)
>DroPse_CAF1 37310 107 + 1
UGCCAACACAUCGGUCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCCUUUGCAUUUUUUGC--------CUC
(((((((......)).))))).(..((((((((...((......))..((.(((((((.(((..((.....))....-))-).))))))).))..))))))))..)--------... ( -27.50)
>DroEre_CAF1 16029 113 + 1
CGCU--UUCCUCCUGCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCCUUUGCAUUUUUUGCGCAUUUGCCUC
((((--((((.(.((....)).).)))))))).............(((((((((((((.(((..((.....))....-))-).))))))).....(((.....)))))...)))).. ( -31.50)
>DroWil_CAF1 9751 96 + 1
CGCU--U---------UGGCAAGUGCAAAGUGCUUACAUUUUUCUGGCAACGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCUUAUGCAUUUUUUUU--------GUC
.(((--.---------.(((((((((((((((....)))))(((((....))))).))))).)))))...)))....-..-.........................--------... ( -20.90)
>DroPer_CAF1 37151 107 + 1
UGCCAACACAUCGGUCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCCUUUGCAUUUUUUGC--------CUC
(((((((......)).))))).(..((((((((...((......))..((.(((((((.(((..((.....))....-))-).))))))).))..))))))))..)--------... ( -27.50)
>consensus
CGCU__U_C_UCCGUCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU_UA_UUCAUUUCCCCUUUGCAUUUUUUGC________CUC
..................(((((.((((((((....)))))))).(((..(((((..((.....))))))))))..................))))).................... (-15.34 = -16.20 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:05 2006