Locus 1584

Sequence ID 2L_DroMel_CAF1
Location 4,262,324 – 4,262,418
Length 94
Max. P 0.808204
window2547

overview

Window 7

Location 4,262,324 – 4,262,418
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 88.16
Mean single sequence MFE -21.00
Consensus MFE -17.99
Energy contribution -17.77
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.92
Structure conservation index 0.86
SVM decision value 0.64
SVM RNA-class probability 0.808204
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4262324 94 - 22407834
ACGGAGGGAGG-----GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC---AGCAACAGGA----CAACAAAAGCAA
.....((....-----.))..((.((((((.(((....))).))))))((((.....))))....(((((((.....---.)))))))..----........)).. ( -20.00)
>DroPse_CAF1 32997 102 - 1
ACUGA----AGCGCUCGCUACGCAAAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGACAACAGCAACAGCAACAGCAACAAUAGCAA
...(.----(((....))).)((.((((((.(((....))).))))))((((.....))))..(((((((((..(....).((....))....))))))))))).. ( -23.70)
>DroSim_CAF1 18213 90 - 1
ACGGA----GG-----GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC---AGCAACAGGA----CAACAAAAGCAA
..((.----..-----.))..((.((((((.(((....))).))))))((((.....))))....(((((((.....---.)))))))..----........)).. ( -20.00)
>DroEre_CAF1 12279 90 - 1
ACUGA----GG-----GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC---AGCAACAGGA----CAACAAAAGCAA
.(((.----(.-----....).)))..((((...............((((((.....))))))..(((((((.....---.)))))))))----)).......... ( -19.60)
>DroYak_CAF1 15132 90 - 1
ACAGA----GG-----GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC---AGCAACAGGA----CAACAAAAGCAA
.....----..-----.....((.((((((.(((....))).))))))((((.....))))....(((((((.....---.)))))))..----........)).. ( -19.00)
>DroPer_CAF1 32946 102 - 1
ACUGA----AGCGCUCGCUACGCAAAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGACAACAGCAACAGCAACAGCAACAAUAGCAA
...(.----(((....))).)((.((((((.(((....))).))))))((((.....))))..(((((((((..(....).((....))....))))))))))).. ( -23.70)
>consensus
ACUGA____GG_____GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC___AGCAACAGGA____CAACAAAAGCAA
.....................((.((((((.(((....))).))))))((((.....))))....(((((((.........)))))))..............)).. (-17.99 = -17.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:59 2006