| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 463,347 – 463,438 |
| Length | 91 |
| Max. P | 0.803687 |
| Location | 463,347 – 463,438 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.70 |
| Mean single sequence MFE | -34.83 |
| Consensus MFE | -21.93 |
| Energy contribution | -22.90 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.803687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 463347 91 - 22407834 CUGAUAUGUACGUGGGCCACGGCCCCUACGAA---GCCACGCCCAGUCAACUGGGCUAUGGAUAUAGCCCA-CAGGCGCUGUCAGGUUCCACCAC------ (((((((((..((((((...(((.........---)))..((((((....))))))..........)))))-)..))).))))))..........------ ( -36.50) >DroSec_CAF1 9400 91 - 1 CUGAUAUGUACGUGGGCCACGGCCCCUACGAA---GCCACGCCCAGUCAACUGGGCUAUGGAUAUAGUCCA-CAGGCGCUGUCAGGUUCCACCAC------ ((((((.((.(((((((....))))..)))..---(((..((((((....))))))..(((((...)))))-..)))))))))))..........------ ( -38.40) >DroSim_CAF1 9331 91 - 1 CUGAUAUGUACGUGGGCCACGGCCCCUACGAA---GCCACGCCCAGUCAACUGGGCUAUGGAUAUAGUCCA-CAGGCUCUGUCAGGUUCCACCAC------ ((((((((((.(.((((....))))))))).(---(((..((((((....))))))..(((((...)))))-..)))).))))))..........------ ( -37.80) >DroEre_CAF1 9460 91 - 1 CUGAUAUGUACGUGGGCCACGGCCCCUACGAA---GCCACGCCCAGUCAACUGAGCUAUGGAUACAGCCCA-CAGGCGCUGCCAGGUUCCACCAC------ .......(((.(.((((....))))))))(.(---(((..((.(((....))).))..(((...((((((.-..)).))))))))))).).....------ ( -27.50) >DroYak_CAF1 9490 91 - 1 CUGAUAUGUACGUGGGCCACGGCCCCUACGAA---GCCACGCCCAGUCAGCUGGGCUACGGAUACAGCCCA-CAGGCGCUGCCAGGUUCCACCAC------ .......(((.(.((((....))))))))(.(---(((..((((((....))))))...((...((((((.-..)).)))))).)))).).....------ ( -34.00) >DroMoj_CAF1 11107 90 - 1 CUGAUCUCUAUGGCU---------CCUAUGAGCCACUCCCGCCCGCCCAGCUGGGCUAUGGCUAUGCUCAGCCAGGCGCUGC--GGUCGCACCACCCAACC ..........(((((---------(....))))))...((((.((((..(((((((.........)))))))..))))..))--))............... ( -34.80) >consensus CUGAUAUGUACGUGGGCCACGGCCCCUACGAA___GCCACGCCCAGUCAACUGGGCUAUGGAUAUAGCCCA_CAGGCGCUGCCAGGUUCCACCAC______ ......((((.(.((((....))))))))).....(((..((((((....))))))...((.......))....))).......((.....))........ (-21.93 = -22.90 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:40 2006