Locus 1579

Sequence ID 2L_DroMel_CAF1
Location 4,254,571 – 4,254,671
Length 100
Max. P 0.996375
window2541

overview

Window 1

Location 4,254,571 – 4,254,671
Length 100
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 75.39
Mean single sequence MFE -26.35
Consensus MFE -12.34
Energy contribution -13.82
Covariance contribution 1.48
Combinations/Pair 1.14
Mean z-score -2.63
Structure conservation index 0.47
SVM decision value 2.69
SVM RNA-class probability 0.996375
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4254571 100 + 22407834
AUUCUAUUUAGGGU-GUGGCCAAAGAAUGGGUUACGAACGACUCCAGCCUCCAUGCUGGGCCAACUCCCAUCAA---------ACCGG--UAUACAUACUCGUAUACUCAUU
..........(((.-.(((((.......(((((......)))))((((......)))))))))...))).....---------...((--(((((......))))))).... ( -30.10)
>DroSec_CAF1 9270 100 + 1
AUUCUAUUUAGGGUCCUGGCCAAAGAAUGGGUUACGAACGACCCUAGCCUCCAUGCUGGGCCAAC----------UCCCAUCAUCCCG--UAUACAUACUCGUAUACUCAUU
..........(((...(((((.......(((((......)))))((((......)))))))))..----------.)))........(--(((((......))))))..... ( -29.90)
>DroSim_CAF1 10435 110 + 1
AUUCUAUUUAGGGUCCUGGCCAAAGAAUGGGUUACGAACGACCCCAGCCUCCAUGCUGGGCCAACUCCCACCAACUCCCAUCAUCCGG--UAUACAUACUCGUAUACUCAUU
..........(((...(((((.......(((((......)))))((((......)))))))))...))).................((--(((((......))))))).... ( -32.30)
>DroEre_CAF1 4620 95 + 1
AUUCUAUUUAGGGU-CUCGCCAAGAAAUGGGUUACGAACGAUCCCUGCCCCACUGCUAC----------------ACCCGUCAUCCAGCGGAUACAUACUCGUAUACUCAUU
...........((.-....))....((((((((((((...(((((((....((......----------------....))....))).))))......))))).))))))) ( -17.10)
>DroYak_CAF1 7158 103 + 1
AUUCUAUUUAGGGU-CUUUCCAAGGAAUGGGUUAUGACCCCCUCCUGCCUCCCUGCCCCUCUGAGUCU------CUUCCCUUAUCCGG--UAUACAUACUCGUAUACUCAUU
((((......((((-.......((((..((((....))))..))))........))))....))))..------............((--(((((......))))))).... ( -22.36)
>consensus
AUUCUAUUUAGGGU_CUGGCCAAAGAAUGGGUUACGAACGACCCCAGCCUCCAUGCUGGGCCAACUC________UCCCAUCAUCCGG__UAUACAUACUCGUAUACUCAUU
...........(((....)))....((((((((((((.....((((((......))))))...........................(......)....))))).))))))) (-12.34 = -13.82 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:53 2006