| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,252,683 – 4,252,789 |
| Length | 106 |
| Max. P | 0.946869 |
| Location | 4,252,683 – 4,252,789 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.55 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -13.34 |
| Energy contribution | -14.10 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.43 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.946869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4252683 106 + 22407834 ---GCUAUGUGCAAUGGUCUUGCAAAUCGAAUGUCAAUUUUCGAUUCAUUUCACGGAACACUUGAAUUGGUUUG-CAGGAA----------CAGGAACAGGAGGCAGCAAAGCAAUGGCA ---(((((((....((.(((((((((((((...((((.(((((..........)))))...)))).))))))))-))))).----------))...)).....((......)).))))). ( -28.50) >DroVir_CAF1 25174 104 + 1 ---GCAAUGUGCAAUGGUCUUGAAAAUUGAAUGUCAAUUUUCGACUCAUUUCACGGAACACUUGAAUUACUUUG-CUGAAAAUAGCGUAGUGAGGAGG-----UG----AA---CCUGCA ---(((..(((.(((((((..((((((((.....))))))))))).)))).)))((..(((((...(((((.((-(((....))))).)))))..)))-----))----..---))))). ( -33.70) >DroGri_CAF1 35374 109 + 1 ---GCAAUGUGCAAUCGUCUCGAAAAUUGAACGUCGAUUUUCGACUCAUUUCACGGAACACUUGAAUUAGUUUG-CUGGAAAUCGCUGAGUCAGGAACAGCAGGA----AA---AUUCCG ---....((((.(((.(..((((((((((.....))))))))))..)))).))))........(((((..((((-(((....((.(((...))))).))))))).----.)---)))).. ( -27.80) >DroWil_CAF1 39589 98 + 1 GUCGCCCUGUGCAAUGGUCUUGCAAAUCGAAUGUCAAUUUUCGACUCAUUUCACGGAACACUUGAAUUGCUUUGGCUCGAA----------GAGCAACG------------GCGACGGCU (((((((((((.(((((.....)...(((((........)))))..)))).)))))..........(((((((.......)----------)))))).)------------))))).... ( -29.30) >DroMoj_CAF1 24157 105 + 1 ---GCAAUGUGCAAUGGUCUCGAAAAUUGAAUGUCAAUUUUCGACUCAUUUCACGGAACACUUGAAUUAGUUUG-CUGAAAAUCGGGUGGCCAGAAGG--C--UG----AA---CCUGCG ---(((..(((.(((((..((((((((((.....)))))))))).))))).)))((..(((((((.((((....-))))...)))))))(((....))--)--..----..---))))). ( -35.60) >consensus ___GCAAUGUGCAAUGGUCUUGAAAAUUGAAUGUCAAUUUUCGACUCAUUUCACGGAACACUUGAAUUAGUUUG_CUGGAAAU_G____G_CAGGAAC_____GG____AA___ACUGCA ...(((.((((.(((((..((((((((((.....)))))))))).))))).))))((((..........))))...........................................))). (-13.34 = -14.10 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:52 2006