Locus 1575

Sequence ID 2L_DroMel_CAF1
Location 4,243,439 – 4,243,536
Length 97
Max. P 0.507614
window2535

overview

Window 5

Location 4,243,439 – 4,243,536
Length 97
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -26.85
Consensus MFE -21.26
Energy contribution -22.13
Covariance contribution 0.87
Combinations/Pair 1.04
Mean z-score -1.65
Structure conservation index 0.79
SVM decision value -0.05
SVM RNA-class probability 0.507614
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4243439 97 - 22407834
GUUGGCGGCGGAGAGAGCUCCU-CUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGGCCUCGCUCCCG
..((((((.((((....)))).-)))))).(((......((((((.....))))))........((((...(((((((....)))))))))))))).. ( -27.70)
>DroSec_CAF1 18483 97 - 1
GUGGGCGGCGGAGAGAGCUUCU-CUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGGCCUCGCUGCCG
...((((((((((((.....))-))(((((.........((((((.....)))))).(((.(((........))).)))....))))).)))))))). ( -28.20)
>DroEre_CAF1 21633 98 - 1
GUGGGCGGCGGAGUGUGCUCCUUUUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGGCCUCGCUGCCA
...((((((((((....))))....(((((.........((((((.....)))))).(((.(((........))).)))....)))))...)))))). ( -28.10)
>DroYak_CAF1 27257 97 - 1
GUGGGCGGCGGAGUUUGCUGCU-UUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGCCCUCGAUGCCA
(.((((((((((((.....)))-))))).....................(((.(((((....((.....)).))))).)))....)))).)....... ( -23.40)
>consensus
GUGGGCGGCGGAGAGAGCUCCU_CUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGGCCUCGCUGCCA
...((((((((((....))))......((((........((((((.....)))))).......))))..(.(((((((....))))))).))))))). (-21.26 = -22.13 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:48 2006