Locus 1573

Sequence ID 2L_DroMel_CAF1
Location 4,239,592 – 4,239,694
Length 102
Max. P 0.965049
window2533

overview

Window 3

Location 4,239,592 – 4,239,694
Length 102
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 87.90
Mean single sequence MFE -28.00
Consensus MFE -23.21
Energy contribution -23.13
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -2.09
Structure conservation index 0.83
SVM decision value 1.58
SVM RNA-class probability 0.965049
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4239592 102 + 22407834
AGAUACGGGGCUUCCUAAGUGGCAGAUUACUUCGGAGU----GCGGUUCUGCACUAAAUACCACUACACAGAUGCAAAAUAAAAA-AAGCCCAUGUCAAUUGGAAUA
.((((..((((((....(((((.......(....)(((----(((....)))))).....))))).((....))...........-)))))).)))).......... ( -24.70)
>DroSec_CAF1 14705 103 + 1
AGAUACGGGGCUUCCUAAGUGGCAGAUUACUUGGGAGU----GCGGCUCUGCACUAAAUACCACUACACAGAUGCAAAAAAAAAAAGAGCCCAUGUCAAUUGGAAUA
.((((..(((((((((((((((....)))))))))(((----(((....))))))...............................)))))).)))).......... ( -29.10)
>DroSim_CAF1 21851 103 + 1
AGAUACGGGGCUUCCUAAGUGGCAGAUUACUUGGGAGU----GCGGCUCUGCACUAAAUACCACUACACAGAUGCAAAAAAAAAAACAGCCCAUGUCAAUUGGAAUA
.((((..(((((((((((((((....))))))))))((----(((....))))).................................))))).)))).......... ( -28.20)
>DroEre_CAF1 15103 98 + 1
AGAUACAGGGCUUCCUAAGUGGCAGAUUACUUGGGAGU----GCGGCUCUGCACUAAAUGCUGCUACACGGAAGCAAAA-----AACAGUCCAUGUCAAUUUGCAUA
.((((..(((((((((((((((....))))))))))((----(..((...(((.....))).))..)))..........-----...))))).)))).......... ( -28.90)
>DroYak_CAF1 23173 102 + 1
AGAUACAGGGCUUCCUAAGUGGCAGAUUACUUGGCAGCGGAGGCGGCUCUGCACAAAAUGCUUCUACACAGAUGCAAAA-----AACAGCCCAUGUCAAUUUGAAUA
.((((..(((((..((((((((....))))))))..((((((....))))))......(((.(((....))).)))...-----...))))).)))).......... ( -29.10)
>consensus
AGAUACGGGGCUUCCUAAGUGGCAGAUUACUUGGGAGU____GCGGCUCUGCACUAAAUACCACUACACAGAUGCAAAA_AAAAAACAGCCCAUGUCAAUUGGAAUA
.((((..(((((((((((((((....)))))))))).........((((((.................)))).))............))))).)))).......... (-23.21 = -23.13 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:46 2006