Locus 1569

Sequence ID 2L_DroMel_CAF1
Location 4,233,140 – 4,233,256
Length 116
Max. P 0.742641
window2525

overview

Window 5

Location 4,233,140 – 4,233,256
Length 116
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 84.06
Mean single sequence MFE -40.06
Consensus MFE -32.40
Energy contribution -32.64
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.81
SVM decision value 0.45
SVM RNA-class probability 0.742641
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4233140 116 - 22407834
ACCAGCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGGGAAGGACGGGAAAGAGGGA--GAGAUGGCAGGGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC
.((..(..((((((((((((.(((........))).)))))........)))))))....)..)).--....((((..(((((((((.(.......).))))))))).))))...... ( -42.60)
>DroSec_CAF1 8286 113 - 1
ACCAUCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGUGGAGGA-----GAGAGGGACUGAGGGGGCAGAAAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC
.((.(((((((((((.((........)))))))....((((....))))....-----......))))))))((.((((...(((((.(.......).))))).)))).))....... ( -40.50)
>DroSim_CAF1 15282 99 - 1
ACCAUCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGGGGAGGG-------------------AAGCAGAGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC
......((((.(((((((((.(((........))).))))).....))))...-------------------......(((((((((.(.......).)))))))))))))....... ( -33.90)
>DroEre_CAF1 8461 105 - 1
ACCAUCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGGGUG----------GGGGG---AGAAUGGCAGAGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC
.(((((((....)).(((((.(((........))).))))).....))))----------)....---....((((..(((((((((.(.......).))))))))).))))...... ( -40.00)
>DroYak_CAF1 16338 113 - 1
ACCAAUGGUCGUCCUGUGGGAGUGCACAAGGACACGCCCACUUGAGGGGAUGAGGA--GAGGGGG---GGGUUGGCAGAGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC
.((..(..((((((((((((.(((........))).))))).....)))))))..)--..))...---..((((((..(((((((((.(.......).))))))))).)))))).... ( -43.30)
>consensus
ACCAUCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGGGGAGGA______AGAGGG___GAGAUGGCAGAGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC
......((((.(((.(((((.(((........))).)))))....))).........................((((((..(.((((......)))).).)))))).))))....... (-32.40 = -32.64 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:38 2006