Locus 1568

Sequence ID 2L_DroMel_CAF1
Location 4,224,484 – 4,224,604
Length 120
Max. P 0.876389
window2524

overview

Window 4

Location 4,224,484 – 4,224,604
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 72.16
Mean single sequence MFE -24.73
Consensus MFE -17.09
Energy contribution -16.77
Covariance contribution -0.33
Combinations/Pair 1.20
Mean z-score -1.38
Structure conservation index 0.69
SVM decision value 0.89
SVM RNA-class probability 0.876389
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4224484 120 + 22407834
UCCAUUGAUUUAGAAACCUUGUAUCUUUCCAAAAUGAGGUGAUAAUUAUCUGGGCCAUCUGGCCAGUAUAUAUGUACAUAUUUUCAAGCGCCCUGAUAAGCAAGCUUAUCUACCCAUUUG
......(((..((....))...)))......(((((.((((...........((((....)))).((((....))))...........))))..((((((....))))))....))))). ( -23.00)
>DroSim_CAF1 6175 112 + 1
UCCAUAUAUGUAGAAACCUUGUAUCUUUCCGAAAUGAGGUGAUAAUUAUGUGGGCCAUCUGGCCAGUUUGUAUAUAU--------AGGCGCCCUGAUAAGCAAGCUUAUCUCCCCACUUG
..((((((..((...((((..(.((.....)).)..))))..))..))))))((((....))))(((((((.(((.(--------(((...))))))).))))))).............. ( -30.10)
>DroYak_CAF1 6575 93 + 1
UCCAUA----UAGAACCUUAGUUUCAUUCCAAAACGAGGUGACCUUUAUCUGGGCCAUCUGGCCAGUUUC---------------------CCUGAUAAGCAAGCUUAUCUCC--GCCUU
......----..........((((.......))))((((((...........((((....))))......---------------------...((((((....))))))..)--))))) ( -21.10)
>consensus
UCCAUA_AU_UAGAAACCUUGUAUCUUUCCAAAAUGAGGUGAUAAUUAUCUGGGCCAUCUGGCCAGUUUAUAU_UA_________A_GCGCCCUGAUAAGCAAGCUUAUCUCCCCACUUG
....................................(((((...........((((....))))..............................((((((....))))))....))))). (-17.09 = -16.77 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:37 2006