Locus 1566

Sequence ID 2L_DroMel_CAF1
Location 4,222,964 – 4,223,059
Length 95
Max. P 0.773678
window2521

overview

Window 1

Location 4,222,964 – 4,223,059
Length 95
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 68.06
Mean single sequence MFE -25.90
Consensus MFE -18.51
Energy contribution -18.97
Covariance contribution 0.45
Combinations/Pair 1.15
Mean z-score -1.01
Structure conservation index 0.71
SVM decision value 0.54
SVM RNA-class probability 0.773678
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4222964 95 - 22407834
CGC-------------------------CUAUUAUAUCACUUAUUCAGUUUCAUCACGCUUAUUUUCCUCAGUGUAUGGGUUUAGGGCACGCAUUGAGGAGUGAGAUCGAUGUGAAGAUG
...-------------------------........((((....((.(((((((...........(((((((((..((.........))..)))))))))))))))).)).))))..... ( -24.00)
>DroSim_CAF1 4662 89 - 1
-------------------------------UCAGAGUUCGUUUUCAGUUUCGACACCCUUAUUUUCCUCAGUGUAUGGGUUUAGGGCACGCAUUGAGGAGUGAGAUCGAAGUGGAGAUG
-------------------------------........((((((((.((((((....(((((..(((((((((..((.........))..)))))))))))))).)))))))))))))) ( -28.80)
>DroYak_CAF1 4886 120 - 1
CCCUUUAAAAAUGAAGUAGAGUUAUUAACUAAUAUUUGACUUGUUUAUUUUCGACACCCUUAUUUUGUUCAGUGCAUAUGUUUAGGGCACGCAUUGAGGAGUGAGAUCGAAGUGGAGAUG
((((((.((((((((...((((((............)))))).))))))))...((((((((...(((...((((.((....))..))))))).))))).))).....)))).))..... ( -24.90)
>consensus
C_C_________________________CUAUUAUAUCACUUAUUCAGUUUCGACACCCUUAUUUUCCUCAGUGUAUGGGUUUAGGGCACGCAUUGAGGAGUGAGAUCGAAGUGGAGAUG
...........................................((((.((((((....(((((..((((((((((....((.....))..))))))))))))))).)))))))))).... (-18.51 = -18.97 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:34 2006