Locus 1565

Sequence ID 2L_DroMel_CAF1
Location 4,221,452 – 4,221,545
Length 93
Max. P 0.939685
window2520

overview

Window 0

Location 4,221,452 – 4,221,545
Length 93
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 75.41
Mean single sequence MFE -24.98
Consensus MFE -15.74
Energy contribution -16.62
Covariance contribution 0.88
Combinations/Pair 1.12
Mean z-score -1.95
Structure conservation index 0.63
SVM decision value 1.30
SVM RNA-class probability 0.939685
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4221452 93 + 22407834
UAUAUAUG---GCUUGUAGCUGCAG----------CAGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACACACACAC-------------AUAUAGCCACA
......((---((((((.((((...----------))))..((((((((((((((((.......)))))))).))))))))............))-------------)...))))).. ( -23.30)
>DroPse_CAF1 10141 109 + 1
UA--UAUG---GCUUGUUGCAGCAGUGGCUGCUCGCUGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACAGAUGUACAUGCUCAC-----ACACAGGCGCA
..--....---(((((((((((((((....))).)))))).((((((((((((((((.......)))))))).))))))))......................-----..))))))... ( -31.30)
>DroSim_CAF1 3142 102 + 1
UAUAUAUG---GCUUGUAGCUGCAG----------CAGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACACACACACA----CACAAUAUAUAUAGCCACA
......((---(((((((((((...----------))))..((((((((((((((((.......)))))))).))))))))...............----.......)))).))))).. ( -24.10)
>DroWil_CAF1 2695 93 + 1
UUUUUUUGCUUGCUUGUUGC---A-----------CUGCAACGUUGUUGGAAUUUUUCACUUAUAAAAUUUUGCCAAAGCAACACACACUCUCACA----CAC-----ACAUAGGC---
.......(((((...(((((---.-----------..)))))((((((((((((((........))))))...)))..))))).............----...-----...)))))--- ( -14.90)
>DroPer_CAF1 10296 109 + 1
UA--UAUG---GCUUGUUGCAGCAGUGGCUGCUCGCUGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACAGAUGUACAUGCUCAC-----ACACAGGCGCA
..--....---(((((((((((((((....))).)))))).((((((((((((((((.......)))))))).))))))))......................-----..))))))... ( -31.30)
>consensus
UAU_UAUG___GCUUGUUGCAGCAG__________CUGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACACACACACA____CAC_____ACAUAGGCACA
...........((((((.((((.............))))..((((((((((((((((.......)))))))).)))))))).............................))))))... (-15.74 = -16.62 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:33 2006