Locus 1563

Sequence ID 2L_DroMel_CAF1
Location 4,209,022 – 4,209,113
Length 91
Max. P 0.664462
window2518

overview

Window 8

Location 4,209,022 – 4,209,113
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.14
Mean single sequence MFE -18.95
Consensus MFE -13.17
Energy contribution -13.12
Covariance contribution -0.05
Combinations/Pair 1.27
Mean z-score -1.29
Structure conservation index 0.69
SVM decision value 0.28
SVM RNA-class probability 0.664462
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4209022 91 - 22407834
UACUUAC-----------UUCAUUCUAUUCAUUAGGUUCAGCACUAUAUCCUGAUUGUUCAGGCGCAGGAUAAUGGCCAACCCAGCUUGUCCACCACCAUAA
.......-----------................(((............(((((....)))))....(((((((((.....)))..)))))))))....... ( -16.20)
>DroSec_CAF1 9994 91 - 1
CACUUAC-----------UUAAUUCUAUUUAUUAGGUUCAGCAUUACAUCCUGAUAGUUCAGGCCCAGGAUAAUGGCCAACCCAGCCUGUCCACCACCAUAA
.....((-----------(((((.......)))))))............(((((....)))))....(((((..(((.......)))))))).......... ( -17.30)
>DroSim_CAF1 9152 91 - 1
UACUUAC-----------UUCAUUUAAUUCAUUAGGUUCAGCAUUACAUCCUGAUAGUUCAGGCCCAGGAUAAUGGCCAACCCAGCCUGUCCACCACCAUAA
.......-----------................(((............(((((....)))))....(((((..(((.......)))))))))))....... ( -17.10)
>DroEre_CAF1 16652 96 - 1
UACUUAGAC------UUGCUUGUUCUACUCAACAGGUUCAGCACUACAUCCUGAUUGUUCAGGCCCAGGAUAAUGGCCAACCCAGCCUGUCCACCACCAUAA
......(..------..(((((((......)))))))....).......(((((....)))))....(((((..(((.......)))))))).......... ( -20.20)
>DroYak_CAF1 9197 102 - 1
UACUUAGGCAUAUUUUUGUUUGUUCUAAUCAUCAGGUUCAGCACUACAUCCUGAUUGUGCAGGCCCAGGACAAUGGCCAACCCAGCCUGUCCACCACCAUAA
......((.........((((((....((.((((((.............)))))).))))))))...(((((..(((.......)))))))).))....... ( -21.72)
>DroPer_CAF1 18590 93 - 1
CAUUGGU--UU-------UUUUUUGGGUCCCACAGGUACAGCACUACAUUCUGAUUGUACAAGCUCAGGAUAGUGGACAGCCUAGCCUAUCGACCACCAUCA
...((((--..-------.......((((....((((...((.(((((((((((..((....))))))))).))))...))...))))...))))))))... ( -21.20)
>consensus
UACUUAC___________UUUAUUCUAUUCAUCAGGUUCAGCACUACAUCCUGAUUGUUCAGGCCCAGGAUAAUGGCCAACCCAGCCUGUCCACCACCAUAA
..................................(((............((((......))))....(((((..(((.......)))))))))))....... (-13.17 = -13.12 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:31 2006