Locus 1562

Sequence ID 2L_DroMel_CAF1
Location 4,198,077 – 4,198,197
Length 120
Max. P 0.828166
window2517

overview

Window 7

Location 4,198,077 – 4,198,197
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.67
Mean single sequence MFE -21.20
Consensus MFE -12.26
Energy contribution -12.50
Covariance contribution 0.24
Combinations/Pair 1.20
Mean z-score -2.15
Structure conservation index 0.58
SVM decision value 0.71
SVM RNA-class probability 0.828166
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4198077 120 - 22407834
AGUUUAUCAAUGUUUCCGACACAGCAACCGCACAUAAAUCCUUAUUUUCAAAGUAUAAGCUUAAAAAGCUAAAUAUGGCGAUAAAAGCGCCAACUUAGCAGCUUCGGCCAACCCAUAACA
.(((......((...((((...(((.........................((((....)))).....(((((...(((((.......)))))..))))).))))))).))......))). ( -21.10)
>DroSec_CAF1 11641 120 - 1
AGUUUAUCAAUAUUUCCGACACAAUAACAACACAUAAAACCCCAUAUUCAAAGUAUUAGCUUAAAAAGCUAAAUAUGGCGAUAAAAGCGCCAACCUCACAGCUUUGGCCAACCCACAACA
...............................................(((((((.((((((.....))))))...(((((.......)))))........)))))))............. ( -18.40)
>DroSim_CAF1 12595 118 - 1
AGCUUAUCAAUAUUUCCGACACAAUUUCAACACAUAAAUCUCCAUUUUCAAAGUAUUAGCUUAAAAAGCUA-AUAUGGCGAUAAAAGCGCCAACAUCACAGCUUUGGCCAAC-CACAACA
...............................................((((((((((((((.....)))))-)).(((((.......)))))........))))))).....-....... ( -19.30)
>DroEre_CAF1 12311 120 - 1
AGCUUAUCAAAUUUUCCGACCAAACGAAAAUACGUAAAUCCCGAUUUUCUCCGUAUUGCCUUAAAAAGCUAAAUCUGGCGAUAAAAUCGCCAACUUCGCAACUUUGGACAACCCACAACA
..............(((((.....((((((((((.((((....))))....))))))..................(((((((...)))))))..)))).....)))))............ ( -19.40)
>DroYak_CAF1 12954 118 - 1
AGCUUAUAACAUUUUCCGAC-AAAUGAAAACACUUAAAUCGUGACUUUCGCUGUGUUGGUCUA-AAAGCUAAAUAUGGCGUUAAAAGCGCCAACUGCGCAGCCUUGGCCAACCCACAACA
.((((.((((.....(((((-(..(((((.(((.......)))..)))))...))))))....-...((((....)))))))).))))(((((..((...)).)))))............ ( -27.80)
>consensus
AGCUUAUCAAUAUUUCCGACACAAUAACAACACAUAAAUCCCCAUUUUCAAAGUAUUAGCUUAAAAAGCUAAAUAUGGCGAUAAAAGCGCCAACUUCGCAGCUUUGGCCAACCCACAACA
...............((((....................................((((((.....))))))...(((((.......)))))...........))))............. (-12.26 = -12.50 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:30 2006