| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 449,116 – 449,223 |
| Length | 107 |
| Max. P | 0.577086 |
| Location | 449,116 – 449,223 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.49 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -15.32 |
| Energy contribution | -15.10 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 449116 107 - 22407834 CCUAAUCCAUAUUUGAAAUGUCUUUCAUUUAAGUGCCAUACUUUCCAUUUCAGUUGGCCAUUAAUUUGUCCAGUUACGGAAUCAUAUUCGGCUAUUCCAUGAUAGCU .....(((....((((((((..........(((((...)))))..))))))))((((.((......)).))))....))).........(((((((....))))))) ( -17.60) >DroSec_CAF1 10928 107 - 1 CCCAAUCCAUACUUGAAAUGUCAUUUAUUUAAGCGCCAUGCUUUUCAUUUCAGUUGGCCAUUAAUUUGUCCAGUUACGGAAUCAUAUUCGGCUAUUCCCUGAUAGCU .....(((....((((((((..........((((.....))))..))))))))((((.((......)).))))....))).........(((((((....))))))) ( -20.10) >DroSim_CAF1 11139 107 - 1 CCCAAUCCAUACUUGAAAUGUCAUUAAUUUAAGCGCCAUGCUUUUCAUUUCAGUUGGCCAUUAAUUUGUCCAGUUACGGAAUCAUAUUCGGCUAUUCCCUGAUAGCU .....(((....((((((((..........((((.....))))..))))))))((((.((......)).))))....))).........(((((((....))))))) ( -20.10) >DroEre_CAF1 10876 107 - 1 CCUAAUCCAUACUUGAAAUGUCAUUCACUUAAGCACCUUGCUUUUCCUUUCAGUUGGCCAUUAAUUUGUCCAGCUACGGAAUCAUAUUCGGCUCUUGCCUGAUAGCU .....(((.....((((......))))...((((.....))))........((((((.((......)).))))))..)))....((((.(((....))).))))... ( -21.00) >DroYak_CAF1 11094 107 - 1 CCUAGUCCACACGUGAAAUGACUUUCAUUUGAGCGCCUUGCUUUUUAUUUCAGUUGGCCAUUAAUUUGUCCAGCUACGGAAUCAUAUUCGGCUAUUCCCUGAUAGCU .....(((......(((((((.........((((.....)))).)))))))((((((.((......)).))))))..))).........(((((((....))))))) ( -23.00) >DroPer_CAF1 25912 103 - 1 UCUCAGCCACCC--AAUAGAUCACUCUGUUAAA--CUUUGAUUUCUCUUUCAGUUGGCCAUUAAUCUGUCAUCCUAUGGCAUCAUCUUUGGCUAUUCCCUGGUGGGC ......(((((.--((((((....))))))...--..((((........)))).((((((......((((((...)))))).......))))))......))))).. ( -23.42) >consensus CCUAAUCCAUACUUGAAAUGUCAUUCAUUUAAGCGCCAUGCUUUUCAUUUCAGUUGGCCAUUAAUUUGUCCAGCUACGGAAUCAUAUUCGGCUAUUCCCUGAUAGCU .....(((......((((((..........((((.....))))..))))))((((((.((......)).))))))..))).........(((((((....))))))) (-15.32 = -15.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:37 2006