Locus 1557

Sequence ID 2L_DroMel_CAF1
Location 4,178,978 – 4,179,083
Length 105
Max. P 0.600115
window2512

overview

Window 2

Location 4,178,978 – 4,179,083
Length 105
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 93.88
Mean single sequence MFE -27.17
Consensus MFE -21.82
Energy contribution -21.57
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -2.29
Structure conservation index 0.80
SVM decision value 0.13
SVM RNA-class probability 0.600115
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4178978 105 + 22407834
A----AGAUAGCGA--AG------GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA
.----.....(((.--.(------....)...((((((...(((((((.((((((.(((.............))).......)))))).)))))))...))))))....)))..... ( -26.72)
>DroSec_CAF1 13541 105 + 1
A----AGAUAGCGA--AG------GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUCACGCCAAGA
.----.((.(((((--((------....)...((((.((((((....)))))).)))).((((((..(((...(....)..)))....)))))).....)))))).))......... ( -27.50)
>DroSim_CAF1 14032 105 + 1
A----AGAUAGCGA--AG------GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA
.----.....(((.--.(------....)...((((((...(((((((.((((((.(((.............))).......)))))).)))))))...))))))....)))..... ( -26.72)
>DroEre_CAF1 14156 105 + 1
A----AGAUAGCGA--AG------GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA
.----.....(((.--.(------....)...((((((...(((((((.((((((.(((.............))).......)))))).)))))))...))))))....)))..... ( -26.72)
>DroYak_CAF1 14114 105 + 1
A----AGAUAGCGA--AG------GAGACAGUGGUAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA
.----.....(((.--.(------....)...((((((...(((((((.((((((.(((.............))).......)))))).)))))))...))))))....)))..... ( -24.72)
>DroAna_CAF1 16831 117 + 1
UGGGUAGAUAGCCGGGAAGAGACUGUGACUGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA
(((((((((((((((.......))).).))))((((((...(((((((.((((((.(((.............))).......)))))).)))))))...)))))).)))).)))... ( -30.62)
>consensus
A____AGAUAGCGA__AG______GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA
......((.(((((..................((((.((((((....)))))).)))).((((((..(((...........)))....))))))......))))).))......... (-21.82 = -21.57 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:24 2006