Locus 1555

Sequence ID 2L_DroMel_CAF1
Location 4,176,220 – 4,176,328
Length 108
Max. P 0.808192
window2510

overview

Window 0

Location 4,176,220 – 4,176,328
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.46
Mean single sequence MFE -23.80
Consensus MFE -20.08
Energy contribution -20.14
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -2.00
Structure conservation index 0.84
SVM decision value 0.64
SVM RNA-class probability 0.808192
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4176220 108 - 22407834
ACACACACACUUUACAU------AUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCUAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC---
.................------.(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.70)
>DroSec_CAF1 10776 108 - 1
ACACACACACUUUACAU------AUUCAGCGUUUCAUAUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC---
.................------.(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.20)
>DroSim_CAF1 11253 108 - 1
ACACACACACUUUACAU------AUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC---
.................------.(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.20)
>DroEre_CAF1 11247 112 - 1
ACA--CACACUUUACAUACUCGUAUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC---
...--...................(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.20)
>DroYak_CAF1 11168 106 - 1
ACA--CACACUUUACAU------AUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC---
...--............------.(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.20)
>DroAna_CAF1 13471 108 - 1
A------CACUUUACGU------AUUCAACGUCUCAUCUACAUUCUGUGUGCCUUUUUCAAUUGCAAUUUUUUGCAGCAUUUGCUGCUUUUGACACGACACAGAUACGACACAGGGCACA
.------......((((------.....))))...............((((((((..((..............(((((....))))).((((........))))...))...)))))))) ( -21.30)
>consensus
ACA__CACACUUUACAU______AUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG___CAGGAC___
..............................((((.........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).........))))... (-20.08 = -20.14 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:22 2006