Locus 1553

Sequence ID 2L_DroMel_CAF1
Location 4,174,137 – 4,174,251
Length 114
Max. P 0.981073
window2508

overview

Window 8

Location 4,174,137 – 4,174,251
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 93.77
Mean single sequence MFE -31.50
Consensus MFE -26.66
Energy contribution -27.14
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.99
Structure conservation index 0.85
SVM decision value 1.88
SVM RNA-class probability 0.981073
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4174137 114 + 22407834
AGAAUCGUGAAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGCAAAGCUGCACUGCAAGAAAACAGUCGAAG
.((...((.......(((((..((((.(((.((((......)))).))).))))..............(((((((.........))))))))))))........))..)).... ( -31.16)
>DroSec_CAF1 8676 114 + 1
GGAAUCGUGGAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGCAAAGCUGCACUGCAAGAAAACAGACGUAG
......((.......(((((..((((.(((.((((......)))).))).))))..............(((((((.........))))))))))))........))........ ( -30.76)
>DroSim_CAF1 9141 114 + 1
GGAAUCGUGGAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGCAAAGCUGCACUGCAAGAAAACAUUCGAAG
.((((.((.......(((((..((((.(((.((((......)))).))).))))..............(((((((.........))))))))))))........)))))).... ( -33.16)
>DroEre_CAF1 9174 114 + 1
AGAACCGUGGAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGUAAGGCUGCACUGCAAGAAAACAGUCGAUU
.((.((......))...((((..((((((...((((((.((((....)))).(((.....)))......)))))).(((...)))..))))))..)))).........)).... ( -30.60)
>DroYak_CAF1 9099 113 + 1
UGAAACGUGGAGGGAAGCGGAA-GCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUGUGGACCCACGGCAAAGCUGCACUGCAAGAAAACAGUCGAAG
......(..(..((..((....-))..)).......(((((.(((((((((.(((.......(....).....))))))))).)))..))))).)..)................ ( -31.80)
>consensus
AGAAUCGUGGAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGCAAAGCUGCACUGCAAGAAAACAGUCGAAG
......((.......(((((..((((.(((.((((......)))).))).))))..............(((((((.........))))))))))))........))........ (-26.66 = -27.14 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:20 2006