| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,172,260 – 4,172,365 |
| Length | 105 |
| Max. P | 0.779483 |
| Location | 4,172,260 – 4,172,365 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.93 |
| Mean single sequence MFE | -31.82 |
| Consensus MFE | -15.14 |
| Energy contribution | -17.10 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4172260 105 + 22407834 AGGCAGCAGACAAAUCGAUGAUUGAGUGAGUGAUGCACUGAAGAUUGAGUCAUUGACU---GAAUCUCAAGAGCCAGUCAUCGACUGGUGA-------CUGGCGACAGGUGAAAA ...((.(.........((.((((.(((.((((((.((........)).)))))).)))---.))))))....((((((((((....)))))-------)))))....).)).... ( -35.30) >DroSec_CAF1 6849 90 + 1 AGGCAGCAGACAAAUCGAUGAUUGAGUGAGUGAUGCACUGAAGAUUGAGUCAUUGACU---GAAUCUCAAGAGCAA----------------------CUGGCGACAGGUGAAAA ..((.((.((....))((.((((.(((.((((((.((........)).)))))).)))---.))))))....))..----------------------(((....)))))..... ( -21.60) >DroSim_CAF1 7257 112 + 1 AGGCAGCAGACAAAUCGAUGAUUGAGUGAGUGAUGCACUGAAGAUUGAGUCAUUGACU---GAAUCUCAAGAGCAAGUCAUCGACUGGUGACUGCUGACUGGCGACAGGUGAAAA ...((((((.((..(((((((((..........(((.((..(((((.((((...))))---.)))))..)).))))))))))))....)).)))))).(((....)))....... ( -38.10) >DroEre_CAF1 7301 107 + 1 AAGCAACCGACAAAUCGAUGAUUG-GUGAGUGAUGCACUAAAGAUUGAGUCAUUGGCUCAAGAAUCUCAAGAGCCAGUCAUCGAAUGGUGU-------CUGGCGACAGGUGAAAA .....(((((((..((((((((((-((.((((...)))).....((((((.....))))))...........))))))))))))....)))-------)((....)))))..... ( -35.60) >DroYak_CAF1 7296 101 + 1 AAGCAACAGACAAAUCGAUGA----GUGAGUGAUGCACUGAAGAUUGAGUCAUUGGCU---GAAUCUCAAGAGCAAGCCAUCGAAAGGUGA-------CUGACGGCAGGUGAGAA .(((....(((.((((..(.(----((((....).)))).).))))..)))....)))---...(((((...((.((.((((....)))).-------))....))...))))). ( -28.50) >consensus AGGCAGCAGACAAAUCGAUGAUUGAGUGAGUGAUGCACUGAAGAUUGAGUCAUUGACU___GAAUCUCAAGAGCAAGUCAUCGAAUGGUGA_______CUGGCGACAGGUGAAAA ..((..........(((((((((..((.((((((.((........)).)))))).)).......((....))...)))))))))..............(((....)))))..... (-15.14 = -17.10 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:18 2006