Locus 1550

Sequence ID 2L_DroMel_CAF1
Location 4,171,566 – 4,171,663
Length 97
Max. P 0.771395
window2505

overview

Window 5

Location 4,171,566 – 4,171,663
Length 97
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 90.80
Mean single sequence MFE -26.13
Consensus MFE -23.40
Energy contribution -23.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.90
SVM decision value 0.53
SVM RNA-class probability 0.771395
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4171566 97 - 22407834
UUCCUCAUCCA--------UUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG
........((.--------((((((((((.(((((.....))))....(((((........)))))............).)))).))))))))............ ( -24.90)
>DroSec_CAF1 6129 97 - 1
UUCCUCAUCCA--------UUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG
........((.--------((((((((((.(((((.....))))....(((((........)))))............).)))).))))))))............ ( -24.90)
>DroSim_CAF1 6539 97 - 1
UUCCUCAUCCA--------UUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG
........((.--------((((((((((.(((((.....))))....(((((........)))))............).)))).))))))))............ ( -24.90)
>DroEre_CAF1 6579 105 - 1
UUCCUCGUCCACAUUGUCGUUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG
...............(((.((((((((((.(((((.....))))....(((((........)))))............).)))).)))))))))........... ( -26.30)
>DroYak_CAF1 6589 105 - 1
UUCCUCAUCCACAUUGUCGUUGCCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG
.............((((((..((.(((((..((((.....))))....(((((........)))))...........))))).)))))))).............. ( -26.90)
>DroAna_CAF1 8351 93 - 1
GCCCACAUCCACA------UUGUCGUUGUCGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUGGAU------
......(((((..------((((((((((.(((((.....))))....(((((........)))))............).)))).))))))...)))))------ ( -28.90)
>consensus
UUCCUCAUCCA________UUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG
........................(((((..((((.....))))....(((((........)))))...........)))))((((.....)))).......... (-23.40 = -23.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:17 2006