Locus 155

Sequence ID 2L_DroMel_CAF1
Location 446,057 – 446,156
Length 99
Max. P 0.647519
window241

overview

Window 1

Location 446,057 – 446,156
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.52
Mean single sequence MFE -34.88
Consensus MFE -20.76
Energy contribution -20.52
Covariance contribution -0.25
Combinations/Pair 1.29
Mean z-score -1.62
Structure conservation index 0.60
SVM decision value 0.24
SVM RNA-class probability 0.647519
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 446057 99 + 22407834
AUUUACCCCAUCCAGGAUCCAGCUGUAAGCCAGCAAGAGUAUCUGGAUGCCAAACAGGGAUCCUUACUGGCGGCAAUGGCCCAAGCAGCACCACCCCCA
.......((.....)).....(((((..(((((..((.....))((((.((.....)).))))...)))))(((....)))...))))).......... ( -28.50)
>DroVir_CAF1 11184 99 + 1
AUCUAUCCCAUACAGGAUCCGGCUGUCAGCCAGCAGGAGUAUCUGGAUGCCAAGCAGAGCUCGCUGCUGGCGGCCAUGGCACAGGGUCAGCCGCCAACG
....((((......)))).((((((.(.((((((((((((.((((.........)))))))).)))))))).((....)).....).))))))...... ( -41.70)
>DroPse_CAF1 22833 99 + 1
AUCUACCCGAUUCAGGAUCCGGCGGUCAGUCAGCAGGAGUACCUGGACUCCAAGCAGGGAUCCCUGCUGGCAGCCAUGGCCCAUCAAGCACCUCCACCA
......((......))....((.((((.(((((((((..(.((((.........)))).)..))))))))).((....)).......).))).)).... ( -32.90)
>DroWil_CAF1 8874 99 + 1
AUUUAUCCCAUUCAAGAUCCAGCUGUCAGUCAACAAGAAUAUCUAGAUGCCAAACAGGGUUCCUUGUUGGCGGCCAUGGCGGCUGCUGCCCCACCGCCA
...........((.((((.....(((......))).....)))).)).(((((.((((....)))))))))(((..(((.(((....))))))..))). ( -29.00)
>DroMoj_CAF1 10109 96 + 1
AUCUAUCCCAUACAGGAUCCGGCCGUUAGCCAGCAGGAGUAUCUGGAUGCCAAGCAGAGCUCCCUGCUGGCCGCCAUGGCGCAGGC---GCCGGCACCG
..............((..(((((.(((.((((((((((((.((((.........))))))).)))))))))(((....)))..)))---)))))..)). ( -41.40)
>DroAna_CAF1 8925 99 + 1
AUCUACCCCAUCCAGGAUCCGGCAGUCAGCCAACAGGAGUAUCUGGACGCCAAGCAGGGUUCCCUACUGGCAGCCAUGGCCCAGGCGGCACCACCGCCG
.......(((((((((.((((((.....)))....)))...)))))).((((.(.(((....))).))))).....)))....(((((.....))))). ( -35.80)
>consensus
AUCUACCCCAUACAGGAUCCGGCUGUCAGCCAGCAGGAGUAUCUGGAUGCCAAGCAGGGAUCCCUGCUGGCGGCCAUGGCCCAGGCAGCACCACCACCA
..............((............(((((((((....((((.........))))....))))))))).((....))..........))....... (-20.76 = -20.52 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:36 2006