Locus 1549

Sequence ID 2L_DroMel_CAF1
Location 4,171,070 – 4,171,162
Length 92
Max. P 0.960184
window2504

overview

Window 4

Location 4,171,070 – 4,171,162
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 88.84
Mean single sequence MFE -23.35
Consensus MFE -20.68
Energy contribution -20.85
Covariance contribution 0.17
Combinations/Pair 1.16
Mean z-score -2.17
Structure conservation index 0.89
SVM decision value 1.51
SVM RNA-class probability 0.960184
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4171070 92 - 22407834
CGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGCUGCCAAAGGA
....(((((......((((((((.......))))))))(((((....)))))....)))))(((.((.((.......)))).)))....... ( -24.40)
>DroSec_CAF1 5655 92 - 1
AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAGUGACCGCAUUGACCAAAUAGAGGCGCUGCCAAAGGA
....(((((......((((((((.......))))))))(((((....)))))....)))))(((.((.((.......)))).)))....... ( -24.30)
>DroSim_CAF1 6057 92 - 1
AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGCUGCCAAAGGA
....(((((......((((((((.......))))))))(((((....)))))....)))))(((.((.((.......)))).)))....... ( -24.40)
>DroEre_CAF1 6133 92 - 1
AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGAAGCCAAAGGA
....((((((....(((((((((.......)))))))))((...(((((....)))))...)).)))))).......(((...)))...... ( -24.30)
>DroYak_CAF1 6131 92 - 1
AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGCAGCCAAAGGA
....((((((....(((((((((.......)))))))))((...(((((....)))))...)).)))))).......(((...)))...... ( -24.30)
>DroAna_CAF1 7869 87 - 1
AGCCAAAUGGCAAACAAUGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAACGAGAAAAUGGAAAAAACCCUA-----
.(((....)))...(((((((((.......)))))))))((...(((((....)))))...))...........((.......))..----- ( -18.40)
>consensus
AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGCUGCCAAAGGA
....((((((....(((((((((.......)))))))))((...(((((....)))))...)).)))))).......(((...)))...... (-20.68 = -20.85 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:16 2006