Locus 1545

Sequence ID 2L_DroMel_CAF1
Location 4,166,783 – 4,166,890
Length 107
Max. P 0.805990
window2499

overview

Window 9

Location 4,166,783 – 4,166,890
Length 107
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 91.02
Mean single sequence MFE -37.34
Consensus MFE -29.22
Energy contribution -29.25
Covariance contribution 0.03
Combinations/Pair 1.18
Mean z-score -3.03
Structure conservation index 0.78
SVM decision value 0.63
SVM RNA-class probability 0.805990
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4166783 107 + 22407834
CUGCUGCC-GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUUGAAGUUUGGGUUUGCGGG
((((.(((-.....(((((((.....)))))))......((((((((((((.....-((((..((......))..))))..))))))))))))......)))..)))). ( -40.90)
>DroSec_CAF1 1636 107 + 1
CUGCUGCC-GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUUGAAGUUCGGGUUUGCGGG
((((.(((-.....(((((((.....)))))))......((((((((((((.....-((((..((......))..))))..))))))))))))......)))..)))). ( -40.90)
>DroSim_CAF1 1619 107 + 1
CUGCUGCC-GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUUGAAGUUCGGGUUUGCGGG
((((.(((-.....(((((((.....)))))))......((((((((((((.....-((((..((......))..))))..))))))))))))......)))..)))). ( -40.90)
>DroEre_CAF1 1853 107 + 1
CUGCUGCU-GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUAGCUGACUUGCUGGUUGAAUGGCUGAAUGAAAGUUCGGGUUUGCGGG
((((.(((-.....(((((((.....))))))).........(((((((((.....-((((((((......))))))))..))))))))).........)))..)))). ( -36.30)
>DroYak_CAF1 1771 108 + 1
CUGCUGCUGGUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUGGAAGUUUGGGUUUGCGGG
((((.(((......(((((((.....)))))))..((((((.(((((((((.....-((((..((......))..))))..)))))))))...)))))))))..)))). ( -37.20)
>DroAna_CAF1 2078 105 + 1
CUGCAGUU-AU-UUGGUAAAUGCAAGGAUGGCCAAUAAAUUAAUUUAGCUAGAUGGCCGACUGGCUGACUUGCAGCAUGAAUGGCUGAAUGAAAAUUUCGGCCU--GGG
((((((..-..-(((((.............))))).........((((((((........)))))))).)))))).......(((((((.......))))))).--... ( -27.82)
>consensus
CUGCUGCC_GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG_CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUGGAAGUUCGGGUUUGCGGG
((((.(((......(((((((.....)))))))......((.(((((((((......((((((((......))))))))..))))))))).))......)))..)))). (-29.22 = -29.25 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:11 2006