| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,159,940 – 4,160,038 |
| Length | 98 |
| Max. P | 0.989059 |
| Location | 4,159,940 – 4,160,038 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 91.75 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -21.65 |
| Energy contribution | -21.82 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.88 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4159940 98 + 22407834 UUUUUUUUGUUGUG----AGCGGGCG---UGGUUCAUACACGAAAGUGAAAAUGCCAAUGAAAAAACAUUUGCAUGCAAAUGCAAAACAUAGUCAAAGGAAACUU ((((((((((((((----....((((---(..(((((........))))).)))))............(((((((....))))))).))))).)))))))))... ( -26.80) >DroSec_CAF1 290182 92 + 1 U-UU-----UUGUG----AGCGGGCG---UGGUUCCUGCACGAAAGUGAAAAUGCCAAUGAAAAAACAUUUGCAUGCAAAUGCAAAACAUAGUCUAAGGCAACUU .-..-----.....----...((((.---((((.....(((....))).....))))...........(((((((....))))))).....))))(((....))) ( -23.70) >DroSim_CAF1 292759 93 + 1 UUUU-----UUGUG----AGCGGGCG---UGGUUCCUGCACGAAAGUGAAAAUGCCAAUGAAAAAACAUUUGCAUGCAAAUGCAAAACAUAGUCACAGGCAACUU ...(-----(((((----(...((((---(........(((....)))...)))))............(((((((....)))))))......)))))))...... ( -24.40) >DroEre_CAF1 304675 93 + 1 UUUU-----GUGUG----AGCGGGCG---UGGUUCCUACACGAAAGUGAAAAUGCCAAUGAAAAAACAUUUGCAUGCAAAUGCAAAACAUAGUCAAAGGCAACUU ((((-----(((((----(((.....---..))))..)))))))).......((((..(((.......(((((((....)))))))......)))..)))).... ( -23.82) >DroYak_CAF1 311663 93 + 1 UUUU-----UUGUG----AGCGGGCG---UGGUUCCUACACGAAAGUGAAAAUGCCAAUGAAAAAACAUUUGCAUGCAAAUGCAAAACAUAGUCAAAGGCAACUU .(((-----(((((----((.((((.---..)))))).))))))))......((((..(((.......(((((((....)))))))......)))..)))).... ( -23.32) >DroAna_CAF1 339099 100 + 1 UUUU-----GUGUGAUGGAGGAGGCGUGGUGGUUUUUACACGAAAGUGAAAAUGCCAAUGAAAAAACAUUUGCAUGCAAAUGCAAAACAUAGUCAAAGGCAACUU ..((-----((((..((.(....(((((..(((.(((.(((....))).))).)))((((......))))..)))))...).))..))))))...(((....))) ( -25.20) >consensus UUUU_____UUGUG____AGCGGGCG___UGGUUCCUACACGAAAGUGAAAAUGCCAAUGAAAAAACAUUUGCAUGCAAAUGCAAAACAUAGUCAAAGGCAACUU ......................(((....((((.....(((....))).....))))...........(((((((....))))))).....))).(((....))) (-21.65 = -21.82 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:05 2006