Locus 154

Sequence ID 2L_DroMel_CAF1
Location 444,559 – 444,654
Length 95
Max. P 0.741077
window240

overview

Window 0

Location 444,559 – 444,654
Length 95
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 78.44
Mean single sequence MFE -30.35
Consensus MFE -16.89
Energy contribution -16.75
Covariance contribution -0.14
Combinations/Pair 1.11
Mean z-score -1.90
Structure conservation index 0.56
SVM decision value 0.45
SVM RNA-class probability 0.741077
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 444559 95 + 22407834
UACCGCCACUGAUUCACCCAGUUCGCAGCAUAACAUCGGCUCUCAGUGCUCAUCCACUUGUAGCACUGUGGUGGUAACAUCUCCUGUAAAUG---GAG
(((((((((...............(.(((.........))))..((((((((......)).)))))))))))))))....((((.......)---))) ( -28.60)
>DroVir_CAF1 9491 88 + 1
AACGACCACGGAUUCACCCAAUUCACAGCACAACAUUGGCUCGCAGUGCUCCUCCACGUGCAGCACGGUGGUGGUCACAACGCCGGCC----------
...((((((((......))..............((((((((.((((((......))).)))))).)))))))))))............---------- ( -26.60)
>DroPse_CAF1 21176 95 + 1
GACGGCCACUGAUUCCCCCAGUUCCCAGCACAACAUUGGAUCCCAGUGCUCCUCCACCUGCAGCACUGUGGUGGUGACAUCUCCAGUGGCCG---GAG
..(((((((((......(((((............)))))....(((((((.(.......).))))))).((((....))))..)))))))))---... ( -37.20)
>DroMoj_CAF1 8440 88 + 1
CACGACCACAGAUUCGCCCAAUUCGCAGCAUAACAUUGGCUCGCAGUGCUCAUCGACGUGCAGCACUGUAGUGGUAACAACACCACCG----------
....(((((......(((.(((............))))))..(((((((((((....))).)))))))).))))).............---------- ( -23.20)
>DroAna_CAF1 7418 98 + 1
AACCACCACAGACUCGCCCAGUUCGCAGCACAACAUUGGCUCCCAGUGCUCCUCCACCUGCAGCACUGUGGUGGUCACCUCGCCGGCCAAUACAGGUG
...((((........((.......))........(((((((..(((((((.(.......).))))))).(((((.....))))))))))))...)))) ( -29.30)
>DroPer_CAF1 21183 95 + 1
GACGGCCACUGAUUCCCCCAGUUCCCAGCACAACAUUGGAUCCCAGUGCUCCUCCACCUGCAGCACUGUGGUGGUGACAUCUCCAGUGGCCG---GAG
..(((((((((......(((((............)))))....(((((((.(.......).))))))).((((....))))..)))))))))---... ( -37.20)
>consensus
AACGACCACUGAUUCACCCAGUUCGCAGCACAACAUUGGCUCCCAGUGCUCCUCCACCUGCAGCACUGUGGUGGUAACAUCUCCAGCG___G___GAG
....(((((........(((((............)))))....((((((((........).)))))))..)))))....................... (-16.89 = -16.75 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:35 2006