| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,153,462 – 4,153,572 |
| Length | 110 |
| Max. P | 0.860901 |
| Location | 4,153,462 – 4,153,572 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.84 |
| Mean single sequence MFE | -31.86 |
| Consensus MFE | -27.28 |
| Energy contribution | -27.53 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.860901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4153462 110 - 22407834 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGUGGCCAUAAAAAAAGUUAGCCCCCC--UGC--A------ ....(((...((((((((.((((.((((.......(((.(((((((.(.......).))))))).)))))))..)))).))))))))(((......))))))....--...--.------ ( -30.11) >DroGri_CAF1 392630 92 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGGGGCCAUAAAA---------------------------- ....(((.....(((((.((((((((.......))))))))..)))))...................(((((......))))))))......---------------------------- ( -28.70) >DroSec_CAF1 282112 114 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGUGGCCAUAAAAAAAGGCAGCCCCCUCACCCUCU------ ....(((.....(((((.((((((((.......))))))))..))))).........(((.((((.(....)...)))).)))(((.........))).)))............------ ( -30.40) >DroWil_CAF1 404611 98 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGUGGCCAUAAAA-AAGGCA--------------------- .....((..(((((((((.((((.((((.......(((.(((((((.(.......).))))))).)))))))..)))).)))))))))....-...)).--------------------- ( -28.61) >DroMoj_CAF1 455759 104 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGCGGCCAUAAAA-AAGCCAAAGCCU--------------- ....(((..(((((((((.((((.((((.......(((.(((((((.(.......).))))))).)))))))..)))).)))))))))....-..))).......--------------- ( -33.61) >DroAna_CAF1 332180 117 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGGGGCCAUAAAA-AAGGCGGCCCCAC--UUUUCUUCCCCA ....(((.....(((((.((((((((.......))))))))..))))).......((.((......))))))).....((((((((......-.....))))))))--............ ( -39.70) >consensus UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGUGGCCAUAAAA_AAGGCAGCCCC________________ .........(((((((((.((((.((((.......(((.(((((((.(.......).))))))).)))))))..)))).)))))))))................................ (-27.28 = -27.53 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:59 2006